You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 4 Next »

This example shows the definition and results for a single analysis, "Summary of Subjects by Treatment and Sex", including the definitions of the grouping factors and method referenced by the analysis:

Lines 1-31:

Show the definitions of the 2 grouping factors referenced by the analysis, both of which are not data-driven (dataDriven = false, shown on lines 3 and 17):

  • Lines 2-18: Show the definition of the "Treatment" grouping factor, which has 3 groups: "Placebo", "Xanomeline Low Dose", and "Xanomeline High Dose".
  • Lines 19-31: Show the definition of the "Sex" grouping factor, which has 2 groups: "Male" and "Female".
Lines 32-44:

Show the definition of the method referenced by the analysis, "Summary by group of a categorical variable", which has 2 operations:

  • Lines 36-39: Show the definition of the "Count of subjects" operation.
  • Lines 40-44: Show the definition of the "Percent of subjects" operation.
Lines 46-58:

Show the definition of the analysis:

  • Lines 49-50: Show that this is an analysis of the USUBJID variable in the ADSL dataset.
  • Line 51: Shows the reference to the "Summary by group of a categorical variable" method.
  • Lines 52-58: Show the references to the 2 grouping factors, both of which are marked as producing a result for each group in the grouping factor (resultsByGroup = true, shown on lines 54 and 57).
Lines 59-155

Show the list of results for the analysis. Each entry in the list (the start of which is indicated by a leading hyphen) represents an instance of the OperationResult class and contains:

  • The identifier value of the statistical operation performed in the operationId attribute.
  • In the resultGroups attribute, a reference to both grouping factor groups associated with the result (indicated by the values of the groupingId and groupId attributes)
  • The raw result value in the rawValue attribute, and
  • In the formattedValue attribute, the result value formatted according to the pattern specified in the resultPattern attribute of the operation referenced by the operationId value. The specified patterns are shown on rows 39 and 43.

YAML Example
analysisGroupings:
- id: AnlsGrouping_01_Trt
  dataDriven: false
  label: Treatment
  groupingVariable: TRT01A
  groups:
  - id: AnlsGrouping_01_Trt_1
    label: Placebo
    order: 1
    ...
  - id: AnlsGrouping_01_Trt_2
    label: Xanomeline Low Dose
    order: 2 
    ...
  - id: AnlsGrouping_01_Trt_3
    label: Xanomeline High Dose
    order: 3 
    ...
- id: AnlsGrouping_02_Sex
  dataDriven: false
  label: Sex
  groupingVariable: SEX
  groups:
  - id: AnlsGrouping_02_Sex_1
    label: Male
    order: 1
    ...
  - id: AnlsGrouping_02_Sex_2
    label: Female
    order: 2
    ...
methods:
- id: Mth01_CatVar_Summ_ByGrp
  name: Summary by group of a categorical variable
  operations:
  - id: Mth01_CatVar_Summ_ByGrp_1_n
    name: Count of subjects
    label: n
    resultPattern: XXX
  - id: Mth01_CatVar_Summ_ByGrp_2_pct
    name: Percent of subjects
    label: '%'    
    resultPattern: ( XX.X)
    ...
analyses:
- id: An03_03_Sex_Summ_ByTrt
  name: Summary of Subjects by Treatment and Sex
  version: 1
  dataset: ADSL
  variable: USUBJID
  methodId: Mth01_CatVar_Summ_ByGrp
  orderedGroupings:
  - order: 1
    resultsByGroup: true
    groupingId: AnlsGrouping_01_Trt
  - order: 2
    resultsByGroup: true
    groupingId: AnlsGrouping_02_Sex
  results:
  - operationId: Mth01_CatVar_Summ_ByGrp_1_n
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_1
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_1
    rawValue: '33'
    formattedValue: '33'
  - operationId: Mth01_CatVar_Summ_ByGrp_1_n
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_1
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_2
    rawValue: '53'
    formattedValue: '53'
  - operationId: Mth01_CatVar_Summ_ByGrp_1_n
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_2
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_1
    rawValue: '34'
    formattedValue: '34'
  - operationId: Mth01_CatVar_Summ_ByGrp_1_n
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_2
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_2
    rawValue: '50'
    formattedValue: '50'
  - operationId: Mth01_CatVar_Summ_ByGrp_1_n
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_3
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_1
    rawValue: '44'
    formattedValue: '44'
  - operationId: Mth01_CatVar_Summ_ByGrp_1_n
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_3
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_2
    rawValue: '40'
    formattedValue: '40'
  - operationId: Mth01_CatVar_Summ_ByGrp_2_pct
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_1
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_1
    rawValue: '38.372093023255815'
    formattedValue: ( 38.4)
  - operationId: Mth01_CatVar_Summ_ByGrp_2_pct
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_1
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_2
    rawValue: '61.627906976744185'
    formattedValue: ( 61.6)
  - operationId: Mth01_CatVar_Summ_ByGrp_2_pct
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_2
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_1
    rawValue: '40.476190476190474'
    formattedValue: ( 40.5)
  - operationId: Mth01_CatVar_Summ_ByGrp_2_pct
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_2
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_2
    rawValue: '59.523809523809526'
    formattedValue: ( 59.5)
  - operationId: Mth01_CatVar_Summ_ByGrp_2_pct
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_3
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_1
    rawValue: '52.38095238095238'
    formattedValue: ( 52.4)
  - operationId: Mth01_CatVar_Summ_ByGrp_2_pct
    resultGroups:
    - groupingId: AnlsGrouping_01_Trt
      groupId: AnlsGrouping_01_Trt_3
    - groupingId: AnlsGrouping_02_Sex
      groupId: AnlsGrouping_02_Sex_2
    rawValue: '47.61904761904762'
    formattedValue: ( 47.6)
  ...
 ...

The results for this analysis could be represented in tabular format as shown in the following table, where the groupingId and groupId values from the 2 two instances of the ResultGroup class found in the resultGroups attribute for each each result are represented in separate pairs of columns ("resultGroup1_groupingId"/"resultGroup1_groupId" and "resultGroup2_groupingId"/"resultGroup2_groupId") so that each result is represented on a single row:

$titleHtml
operationIdresultGroup1_groupingIdresultGroup1_groupIdresultGroup2_groupingIdresultGroup2_groupIdrawValueformattedValue
Mth01_CatVar_Summ_ByGrp_1_nAnlsGrouping_01_TrtAnlsGrouping_01_Trt_1AnlsGrouping_02_SexAnlsGrouping_02_Sex_13333
Mth01_CatVar_Summ_ByGrp_1_nAnlsGrouping_01_TrtAnlsGrouping_01_Trt_1AnlsGrouping_02_SexAnlsGrouping_02_Sex_25353
Mth01_CatVar_Summ_ByGrp_1_nAnlsGrouping_01_TrtAnlsGrouping_01_Trt_2AnlsGrouping_02_SexAnlsGrouping_02_Sex_13434
Mth01_CatVar_Summ_ByGrp_1_nAnlsGrouping_01_TrtAnlsGrouping_01_Trt_2AnlsGrouping_02_SexAnlsGrouping_02_Sex_25050
Mth01_CatVar_Summ_ByGrp_1_nAnlsGrouping_01_TrtAnlsGrouping_01_Trt_3AnlsGrouping_02_SexAnlsGrouping_02_Sex_14444
Mth01_CatVar_Summ_ByGrp_1_nAnlsGrouping_01_TrtAnlsGrouping_01_Trt_3AnlsGrouping_02_SexAnlsGrouping_02_Sex_24040
Mth01_CatVar_Summ_ByGrp_2_pctAnlsGrouping_01_TrtAnlsGrouping_01_Trt_1AnlsGrouping_02_SexAnlsGrouping_02_Sex_138.3720930232558( 38.4)
Mth01_CatVar_Summ_ByGrp_2_pctAnlsGrouping_01_TrtAnlsGrouping_01_Trt_1AnlsGrouping_02_SexAnlsGrouping_02_Sex_261.6279069767442( 61.6)
Mth01_CatVar_Summ_ByGrp_2_pctAnlsGrouping_01_TrtAnlsGrouping_01_Trt_2AnlsGrouping_02_SexAnlsGrouping_02_Sex_140.4761904761905( 40.5)
Mth01_CatVar_Summ_ByGrp_2_pctAnlsGrouping_01_TrtAnlsGrouping_01_Trt_2AnlsGrouping_02_SexAnlsGrouping_02_Sex_259.5238095238095( 59.5)
Mth01_CatVar_Summ_ByGrp_2_pctAnlsGrouping_01_TrtAnlsGrouping_01_Trt_3AnlsGrouping_02_SexAnlsGrouping_02_Sex_152.3809523809524( 52.4)
Mth01_CatVar_Summ_ByGrp_2_pctAnlsGrouping_01_TrtAnlsGrouping_01_Trt_3AnlsGrouping_02_SexAnlsGrouping_02_Sex_247.6190476190476( 47.6)
$warningHtml
Alternatively, to aid readability, each of the identifier values could be used to retrieve and include additional descriptive information from the definitions of the operations, grouping factors, and groups:
$titleHtml
operationIdoperation_labelresultGroup1_groupingIdresultGroup1_grouping_labelresultGroup1_groupIdresultGroup1_group_labelresultGroup2_groupingIdresultGroup2_grouping_labelresultGroup2_groupIdresultGroup2_group_labelrawValueformattedValue
Mth01_CatVar_Summ_ByGrp_1_nnAnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_1PlaceboAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_1Male3333
Mth01_CatVar_Summ_ByGrp_1_nnAnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_1PlaceboAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_2Female5353
Mth01_CatVar_Summ_ByGrp_1_nnAnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_2Xanomeline Low DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_1Male3434
Mth01_CatVar_Summ_ByGrp_1_nnAnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_2Xanomeline Low DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_2Female5050
Mth01_CatVar_Summ_ByGrp_1_nnAnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_3Xanomeline High DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_1Male4444
Mth01_CatVar_Summ_ByGrp_1_nnAnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_3Xanomeline High DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_2Female4040
Mth01_CatVar_Summ_ByGrp_2_pct%AnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_1PlaceboAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_1Male38.3720930232558( 38.4)
Mth01_CatVar_Summ_ByGrp_2_pct%AnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_1PlaceboAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_2Female61.6279069767442( 61.6)
Mth01_CatVar_Summ_ByGrp_2_pct%AnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_2Xanomeline Low DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_1Male40.4761904761905( 40.5)
Mth01_CatVar_Summ_ByGrp_2_pct%AnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_2Xanomeline Low DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_2Female59.5238095238095( 59.5)
Mth01_CatVar_Summ_ByGrp_2_pct%AnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_3Xanomeline High DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_1Male52.3809523809524( 52.4)
Mth01_CatVar_Summ_ByGrp_2_pct%AnlsGrouping_01_TrtTreatmentAnlsGrouping_01_Trt_3Xanomeline High DoseAnlsGrouping_02_SexSexAnlsGrouping_02_Sex_2Female47.6190476190476( 47.6)
$warningHtml

  • No labels