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Tags: FISH, EGFR, Cytogenetic, cytogenetics

This example is currently in draft.


This example shows findings from a cytogenetic assessment of EGFR gene copy number amplification with the purpose of determining the diagnostic status of patients with non-small cell lung cancer. In this example, the findings are generated using fluorescence in situ hybridization (FISH) methodology and semi-quantitative microscopic assessment by a pathologist. Microscopic assessments are then summarized to a diagnostic status using a specific algorithm represented in GFANMTH.


Units need to be confirmed. Should we have a value for chromosome. GENSR is this applicable or needed (e.g., for exon)

Row 

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gf.xpt

RowSTUDYIDDOMAINUSUBJIDSPDEVIDNHOIDGFSEQGFGRPIDGFREFIDGFSPIDGFLNKIDGFLNKGRPGFTESTCDGFTESTGFTSTDTLGFORRESGFORRESUGFORREFGFSTRESCGFSTRESNGFSTRESUGFSTREFCGFSTREFNGFRESCATGFINHERTGFGENREFGFCHROMGFSYMGFSYMTYPGFGENLOCGFGENSRGFSEQIDGFPVRIDGFCOPYIDGFSTATGFREASNDGFXFNGFNAMGFSPECGFMETHODGFRUNIDGFANMETHGFBLFLGFDRVFLGFLLOQGFREPNUMVISITNUMVISITVISITDYGFDTCGFDYGFTPTGFTPTNUMGFELTMGFTPTREF

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