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This example shows findings from an assessment of the HTT gene sequence with the purpose of determining the number of CAG repeats in subjects with Huntington's Disease.
Glenn Barnes -
gf.xpt
Row 1: Shows the predicted number of CAG repeats for one allele of the HTT gene in the subject. The arbitrary allele identifier is shown in GFCOPYID. Shows the ... . The ... is shown in variable GFCOPYID. Row 3: Shows the ... . The ... is shown in variable GFCOPYID. Row 4: Shows the ... . The ... is shown in variable GFCOPYID. Row 5: Shows the ... . The ... is shown in variable GFCOPYID. Row 6: Shows the ... . The ... is shown in variable GFCOPYID.
gf.xpt
gf.xpt
Row STUDYID DOMAIN USUBJID GFSEQ GFREFID GFTESTCD GFTEST GFTSTDTL GFORRES GFSTRESC GFSTRESN GFSYM GFSYMTYP GFGENLOC GFSEQID GFCOPYID GFSPEC GFMETHOD VISITNUM GFDTC 1 ABC123 GF HD01-101 1 789879 VNTR Variable Number Tandem Repeats PREDICTED NUMBER OF CAG REPEATS 43 43 43 HTT GENE WITH PROTEIN PRODUCT c.52_54 LRG_763t1 1 gDNA CAPILLARY ELECTROPHORESIS 1 2017-05-22 2 ABC123 GF HD01-101 2 789879 VNTR Variable Number Tandem Repeats PREDICTED NUMBER OF CAG REPEATS 25 25 25 HTT GENE WITH PROTEIN PRODUCT c.52_54 LRG_763t1 2 gDNA CAPILLARY ELECTROPHORESIS 1 2017-05-22 3 ABC123 GF HD01-101 3 679898 VNTR Variable Number Tandem Repeats NUMBER OF CAG REPEATS 44 44 44 HTT GENE WITH PROTEIN PRODUCT c.52_54 LRG_763t1 1 gDNA SEQUENCING 1 2017-05-22 4 ABC123 GF HD01-101 4 679898 VNTR Variable Number Tandem Repeats NUMBER OF CAG REPEATS 23 23 23 HTT GENE WITH PROTEIN PRODUCT c.52_54 LRG_763t1 2 gDNA SEQUENCING 1 2017-05-22 5 ABC123 GF HD01-101 5 679898 VNTR Variable Number Tandem Repeats NUCLEOTIDE SEQUENCE CAG[44]CAACAG[2]CCGCCA[1]CCG[7]CCT[2] CAG[44]CAACAG[2]CCGCCA[1]CCG[7]CCT[2] HTT GENE WITH PROTEIN PRODUCT c.52_153 LRG_763t1 1 gDNA SEQUENCING 1 2017-05-22 6 ABC123 GF HD01-101 6 679898 VNTR Variable Number Tandem Repeats NUCLEOTIDE SEQUENCE CAG[23]CAACAG[2]CCGCCA[1]CCG[7]CCT[2] CAG[23]CAACAG[2]CCGCCA[1]CCG[7]CCT[2] HTT GENE WITH PROTEIN PRODUCT c.52_153 LRG_763t1 2 gDNA SEQUENCING 1 2017-05-22
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