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This example is currently in draft.

This example shows findings from an assessment of ... with the purpose of determining...  .

Glenn Barnes -

  • This example was from an oncology study.
  • Assessment and reportable terminology (TESTCD/TEST and TSTDTL) to be finalized with Erin and team.
  • We did not populate SYMTYP and units. Should this be double checked? 

Row 1:Shows the ... .
Row 2:Shows the ... .
Row 3:Shows the ... .
Row 4:Shows the ... .
Row 5:Shows the ... .
Row 6:Shows the ... .

gf.xpt

gf.xpt

RowSTUDYIDDOMAINUSUBJIDGFSEQGFGRPIDGFREFIDGFTESTCDGFTESTGFTSTDTLGFORRESGFORRESUGFSTRESCGFSTRESNGFSTRESUGFGENREFGFCHROMGFSYMGFSYMTYPGFGENLOCGFXFNGFNAMGFSPECGFMETHODVISITNUMVISITVISITDYGFDTCGFDY
1GR123GF10000111TRF001338(TBD)Sequence RearrangementVARIANT IMPACT CLASSIFICATIONlikely
likely

GRCh37.75



/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
2GR123GF10000121TRF001338(TBD)Sequence Rearrangement"REARRANGEMENT PARTNER 1"BRD4
BRD4

GRCh37.7519BRD4
15383893-15384049/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
3GR123GF10000131TRF001338(TBD)Sequence Rearrangement"REARRANGEMENT PARTNER 2"MYO10
MYO10

GRCh37.755MYO10
16724239-16724557/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
4GR123GF10000141TRF001338(TBD)Sequence Rearrangement"VARIANT DESCRIPTION"truncation
truncation

GRCh37.75



/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
5GR123GF10000151TRF001338(TBD)Sequence Rearrangement"IN FRAME"unknown
unknown

GRCh37.75



/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
6GR123GF10000161TRF001338(TBD)Sequence RearrangementREAD DEPTH45
4545
GRCh37.75



/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
$warningHtml

Dataset Wrapper Debug Message

Please add a row column to your dataset.

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