Interferon-Gamma Response Assays - linking to BE (For Joleen to work on)

The BE example below show

Row 1:	Shows the collection of the blood sample.
Row 2:	Shows the extraction of the plasma via centrifuge. BESPDEVID holds the identifier for the container into which the plasma is placed. (Not shown: any preservatives with which the container comes pretreated, which would be stored in the Device Properties (DO) domain.)
Row 3:	Shows the transportation of the plasma from the site to the lab.
Row 4:	Shows the extraction of the RNA, which includes purification and quality control testing to make sure the sample is of a high enough quality to be viable. BESPDEVID holds the identifier for the purification kit.
Rows 5-7:	Show the aliquoting of the RNA.
Row 8:	Shows the sequencing of the first RNA aliquot. (Not shown: results from sequencing, which would be stored in the Pharmacogenomics Findings (PF) domain.)
Rows 9-10:	Show the freezing of the second and third RNA aliquots.

be.xpt

Row	STUDYID	DOMAIN	USUBJID	SPDEVID	BESEQ	BEREFID	BETERM	BEDECOD	BEPARTY	BEPRTYID	BECAT	VISITNUM	BEDTC	BESTDTC	BEENDTC
1	3441271	BE	MU-298		1	298B1	Collecting	COLLECTING	SITE	05	COLLECTION	2	2010-04-01T11:50	2010-04-01T11:50
2	3441271	BE	MU-298	293USHE8	2	298B1-1	Extracting	EXTRACTING	SITE	05	EXTRACTION	2	2010-04-01T11:50	2010-04-01T12:10

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Dataset Wrapper Debug Message

Please add a row column to your dataset.

The specimen type is given in a supplemental qualifier that mimics the standard findings variable --SPEC, and draws from the 2 codelists (GENSMP and SPECTYPE) for its values, depending on whether or not the biospecimen is a sample of the subject's genetic material.

Rows 1-2:	Give the specimen types for the first 2 specimens as blood and plasma, respectively. These values come from the SPECTYPE codelist.

Row Captions Debug Message

There seems to be only one row caption. Please rephrase as narrative.

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suppbe.xpt

Row	STUDYID	RDOMAIN	USUBJID	IDVAR	IDVARVAL	QNAM	QLABEL	QVAL	QORIG	QEVAL
1	3441271	BE	MU-298	BEREFID	298B1	BESPEC	Specimen Type	BLOOD	CRF
2	3441271	BE	MU-298	BEREFID	298B1-1	BESPEC	Specimen Type	PLASMA	CRF

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Dataset Wrapper Debug Message

Please add a row column to your dataset.

The IS example shows the measured changes in the interferon gamma levels in the subject's plasma sample.

is.xpt

xx.xpt

Row	STUDYID	DOMAIN	USUBJID	SPDEVID	ISSEQ	ISGRPID	ISLNKID	ISTESTCD	ISTEST	ISTSTCND	ISCNDAGT	ISTSTDTL	ISORRES	ISORRESU	ISSTRESC	ISSTRESN	ISSTRESU	ISSPEC	ISMETHOD	ISDTC
1	ABC	IS	ABC-01-203	ABC001	1	1	B	IFNG	Interferon Gamma	WITHOUT STIMULATING AGENT			0.9	IU/mL	0.9	0.9	IU/mL	PLASMA	ELISA	2013-08-26
2	ABC	IS	ABC-01-203	ABC001	2	1	B	IFNG	Interferon Gamma	WITH STIMULATING AGENT	TB1 Antigen		6.2	IU/mL	6.2	6.2	IU/mL	PLASMA	ELISA	2013-08-26
3	ABC	IS	ABC-01-203	ABC001	2	1	B	IFNG	Interferon Gamma	WITH STIMULATING AGENT	TB2 Antigen		9.8	IU/mL	9.8	9.8	IU/mL	PLASMA	ELISA	2013-08-26
4	ABC	IS	ABC-01-203	ABC001	3	1	B	IFNG	Interferon Gamma	WITH STIMULATING AGENT	Mitogen		5	IU/mL	5	5	IU/mL	PLASMA	ELISA	2013-08-26
5	ABC	IS	ABC-01-203	ABC001	4	1	B	IFNG	Interferon Gamma			INTERPRETATION	POSITIVE		POSITIVE				ELISA	2013-08-26

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