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This example shows findings from an assessment of ... with the purpose of determining... .
Glenn Barnes - This example was from an oncology study.
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gf.xpt
gf.xpt
| Row | STUDYID | DOMAIN | USUBJID | GFSEQ | GFGRPID | GFREFID | GFTESTCD | GFTEST | GFTSTDTL | GFORRES | GFORRESU | GFSTRESC | GFSTRESN | GFSTRESU | GFGENREF | GFCHROM | GFSYM | GFSYMTYP | GFGENLOC | GFXFN | GFNAM | GFSPEC | GFMETHOD | VISITNUM | VISIT | VISITDY | GFDTC | GFDY |
|---|
| 1 | GR123 | GF | 10000 | 1 |
| TRF001338 | SHRTVAR | Short Variation | VARIANT IMPACT CLASSIFICATION | known |
| known |
|
| GRCh37.75 | 3 | BAP1 |
| 52438573 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 2 | GR123 | GF | 10000 | 2 |
| TRF001338 | SHRTVAR | Short Variation | PREDICTED AMINO ACID CHANGE | R383fs*15 |
| R383fs*15 |
|
| GRCh37.75 | 3 | BAP1 |
| 52438573 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 3 | GR123 | GF | 10000 | 3 |
| TRF001338 | SHRTVAR | Short Variation | PREDICTED CODING SEQUENCE CHANGE | 1145_1146insG |
| 1145_1146insG |
|
| GRCh37.75 | 3 | BAP1 |
| 52438573 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 4 | GR123 | GF | 10000 | 4 |
| TRF001338 | SHRTVAR | Short Variation | READ DEPTH | 262 |
| 262 |
|
| GRCh37.75 | 3 | BAP1 |
| 52438573 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 5 | GR123 | GF | 10000 | 5 |
| TRF001338 | SHRTVAR | Short Variation | VARIANT READ DEPTH/READ DEPTH | 20 | % | 20 | 20 | % | GRCh37.75 | 3 | BAP1 |
| 52438573 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 6 | GR123 | GF | 10000 | 6 |
| TRF001338 | SHRTVAR | Short Variation | VARIANT IMPACT CLASSIFICATION | unknown |
| unknown |
|
| GRCh37.75 | 22 | CYP2D6 |
| 42525085 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 7 | GR123 | GF | 10000 | 7 |
| TRF001338 | SHRTVAR | Short Variation | PREDICTED AMINO ACID CHANGE | W152fs*2 |
| W152fs*2 |
|
| GRCh37.75 | 22 | CYP2D6 |
| 42525085 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 8 | GR123 | GF | 10000 | 8 |
| TRF001338 | SHRTVAR | Short Variation | PREDICTED CODING SEQUENCE CHANGE | 454_454delA |
| 454_454delA |
|
| GRCh37.75 | 22 | CYP2D6 |
| 42525085 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 9 | GR123 | GF | 10000 | 9 |
| TRF001338 | SHRTVAR | Short Variation | READ DEPTH | 162 |
| 162 |
|
| GRCh37.75 | 22 | CYP2D6 |
| 42525085 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
| 10 | GR123 | GF | 10000 | 10 |
| TRF001338 | SHRTVAR | Short Variation | VARIANT READ DEPTH/READ DEPTH | 51 | % | 51 | 51 | % | GRCh37.75 | 22 | CYP2D6 |
| 42525085 | /compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xml | ACME XYZ | DNA | TARGETED GENOME SEQUENCING | 1 | SCREENING | 1 | 2022-01-25 | 2 |
|---|
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