- Created by Lou Ann Kramer, last modified by Christine Connolly on May 06, 2024
This is an example showing trial design, results data, and related datasets (e.g, tobacco description, device identification, smoking regimen) for study #123, test article TA321: In Vitro Mammalian Cell Gene Mutation Test (L5178Y/TK+/- Mouse Lymphoma Assay).
In this example, the tobacco product is dissolved in a solvent (vehicle is PBS). Some experimental units are treated with a metabolic activation system (S9, using rat liver). There were 6 concentrations of test article used, treating duplicate cultures (A, B). The test article is added to the cell suspension, where the percent suspension growth is measured. Treatment exposure is for 4 hours; then there is a wash process, followed by a 2-day phenotypic expression period. The suspension is then plated onto 3 plates with trifluorothymidine (TFT) and three plates with cloning medium without TFT or cloning efficiency (CE) colonies. After incubation for an additional 10-day mutant selection duration, the total mutant frequency and induced mutant frequency are calculated from the TFT colony plates and the percent relative total growth is calculated from the TFT and CE colony plates based upon percent suspension growth.
Table 1. Initial Definitive Mutagenicity Assay (4-Hour Exposure –S9)
Solvent = PBS A and B are duplicate cultures
****= Cultures treated at other concentrations were not cloned as higher concentrations were available for evaluation
*= Plate contaminated
**= Precipitation
Rows 1-2: | Show 2 records for TSPARMCD = "GLPTYP", using TSSEQ to indicate multiple records, since both GLP types apply for this example study. |
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Row 3: | Shows that this study was conducted as a GLP study. |
Rows 4-5: | Shows the study start date and study title. |
Rows 6-7: | Show the version of SEND Implementation Guide and version of Controlled Terminology used in this study. |
Row 8: | Shows the applicant's organization. |
Rows 9-12: | Show that TSGRPID has been used to link records (name, location, country) related to the test facility (TSGRPID = 1). The study director is associated with the test facility. |
Rows 13-15: | Show that TSGRPID (TSGRPID=2) has been used to link the information on the testing guideline followed on this study (TSTGDNAM, TSTGDORG, TSTGDVER). |
Row 16: | Shows the study type for this study. |
Row 17: | Shows that this study includes a Mammalian Cell Gene Mutation Assay. |
Rows 18-19: | Show that TSGRPID (TSGRPID = 3) has been used to link the information for 1 species (Mouse) with the cell line that is tested in this study. |
ts.xpt
STUDYID | DOMAIN | TSSEQ | TSGRPID | TSPARMCD | TSPARM | TSVAL | |
---|---|---|---|---|---|---|---|
1 | 123 | TS | 1 | GLPTYP | Good Laboratory Practice Type | FDA | |
2 | 123 | TS | 2 | GLPTYP | Good Laboratory Practice Type | OECD | |
3 | 123 | TS | 1 | GLPFL | GLP Flag | Y | |
4 | 123 | TS | 1 | STSTDTC | Study Start Date | 2020-01-01 | |
5 | 123 | TS | 1 | STITLE | Study Title | Study #123, Test Article TA321: In Vitro Mammalian Cell Gene Mutation Test (L5178Y/TK+/- Mouse Lymphoma Assay) | |
6 | 123 | TS | 1 | SNDIGVER | SEND Implementation Guide Version | TOBACCO IMPLEMENTATION GUIDE VERSION 1.0 | |
7 | 123 | TS | 1 | SNDCTVER | SEND Controlled Terminology Version | SEND Terminology 2021-09-30 | |
8 | 123 | TS | 1 | APPLCNT | Applicant | Example Applicant Inc. | |
9 | 123 | TS | 1 | 1 | TSTFNAM | Test Facility Name | Example Tox Lab Name |
10 | 123 | TS | 1 | 1 | TSTFLOC | Test Facility Location | 10 Somewhere Street, Montgomery, AL 10000 |
11 | 123 | TS | 1 | 1 | TFCNTRY | Test Facility Country | USA |
12 | 123 | TS | 1 | 1 | STDIR | Study Director | Dr. R. Smith |
13 | 123 | TS | 1 | 2 | TSTGDNAM | Testing Guideline Name | TEST NO. 490 |
14 | 123 | TS | 1 | 2 | TSTGDORG | Testing Guideline Organization | OECD |
15 | 123 | TS | 1 | 2 | TSTGDVER | Testing Guideline Version | 2016-07-29 |
16 | 123 | TS | 1 | SSTYP | Study Type | GENOTOXICITY IN VITRO | |
17 | 123 | TS | 1 | GNTXAID | Genetic Toxicology Assay Identifier | MLA | |
18 | 123 | TS | 1 | 3 | SPECIES | Species | Mouse |
19 | 123 | TS | 1 | 3 | CELLLN | Cell Line | TK+/- -3.7.2C subline of L5178Y cells |
TOBA-463 OPEN
This example Trial Set (TX) dataset shows information about the test conditions for all the trial sets (A1, A1CE, A1TFT, A2, A2CE, A2TFT) in this study.
Note that there are three trial set parameters that link to other important datasets: SPTOBID, APDEVID, and SMKRGM.
- SPTOBID (Applicant-Defined Tobacco Product ID) is used to uniquely identify the tobacco product. The value of SPTOBID (e.g., CIG01a) matches the value for SPTOBID in all the TOPARMCD-TOVAL pairs in the Tobacco Product Identifiers and Descriptors (TO) dataset example in Section 3.1.2, Product Design Parameters and Conformance Testing, Example 1. The TOPARMCD-TOVAL pairs identify this unique product, CIG01a. The TO domain is described in Section 2.8.8.1, Tobacco Product Identifiers and Descriptors (TO).
- The value of APDEVID (e.g., PUFFMASTER3K) matches the value of SPDEVID in all the DIPARMCD-DIVAL pairs that identify this unique device in the DI dataset. SPDEVID is the applicant-defined device identifier that is used to uniquely identify the device in the Unique Device Identification (DI) dataset (see also Section 2.8.9.7, SEND Device Identifiers (DI)). This is shown in the DI dataset in Section 3.1.3.2, HPHCs, Other Constituents, and Smoking/Vaping Regimens, Example 1.
- SMKRGM serves as a link to the Device-In Use Properties (DU) domain (see also Section 2.8.9.8, SEND Device-In-Use (DU)), where a matching value of SMKRGM indicates parameters of the smoking regimen performed by the smoking machine, as in the DU dataset in Section 3.1.3.2, HPHCs, Other Constituents, and Smoking/Vaping Regimens, Example 2.
Rows 1-23: | Show trial set parameters and trial set values that comprise the test conditions for the set A1, both cultures A and B. Set A1 is the data for the product at a concentration of 31.3 ug/mL, with 4-hour exposure, without S9 metabolic activation. |
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Rows 24-47: | Show trial set parameters and trial set values that comprise the test conditions for the set A1CE, both cultures A and B. Set A1CE is the data for the product at a concentration of 31.3 ug/mL, with 4-hour exposure, without S9 metabolic activation in cloning efficiency (CE) colonies, in other words in plates with cloning medium without trifluorothymidine (TFT). |
Rows 48-74: | Show trial set parameters and trial set values that comprise the test conditions for the set A1TFT, both cultures A and B. Set A1TFT is the data for the product at a concentration of 31.3 ug/mL, with 4-hour exposure, without S9 metabolic activation in plates with cloning medium with trifluorothymidine (TFT). |
Rows 75-93: | Show trial set parameters and trial set values that comprise the test conditions for the set A2, both cultures A and B. Set A2 is the data for the product at a concentration of 500 ug/mL, with 4-hour exposure, without S9 metabolic activation. |
Rows 94-113: | Show trial set parameters and trial set values that comprise the test conditions for the set A2CE, both cultures A and B. Set A2CE is the data for the product at a concentration of 500 ug/mL, with 4-hour exposure, without S9 metabolic activation in cloning efficiency (CE) colonies, in other words in plates with cloning medium without trifluorothymidine (TFT). |
Rows 114-136: | Show trial set parameters and trial set values that comprise the test conditions for the set A2TFT, both cultures A and B. Set A2 is the data for the product at a concentration of 500 ug/mL, with 4-hour exposure, without S9 metabolic activation in plates with cloning medium with trifluorothymidine (TFT). |
Row | STUDYID | DOMAIN | SETCD | SET | TXSEQ | TXPARMCD | TXPARM | TXVAL |
---|---|---|---|---|---|---|---|---|
1 | 123 | TX | A1 | 4_-S9_C31.3 | 1 | MTACTIND | Metabolic Activating Agent Name | NOT APPLICABLE |
2 | 123 | TX | A1 | 4_-S9_C31.3 | 2 | METACTFL | Presence of Metabolic Activation Flag | N |
3 | 123 | TX | A1 | 4_-S9_C31.3 | 3 | IVTDMIN | In vitro Treatment Duration Minimum | 3 |
4 | 123 | TX | A1 | 4_-S9_C31.3 | 4 | IVTDTRG | In vitro Treatment Duration Target | 3.5 |
5 | 123 | TX | A1 | 4_-S9_C31.3 | 5 | IVTDMAX | In vitro Treatment Duration Maximum | 4 |
6 | 123 | TX | A1 | 4_-S9_C31.3 | 6 | IVTDU | In vitro Treatment Duration Unit | HOURS |
7 | 123 | TX | A1 | 4_-S9_C31.3 | 7 | PHNXPDUR | In vitro Phenotypic Expression Duration | 2 |
8 | 123 | TX | A1 | 4_-S9_C31.3 | 8 | PHNXPDU | In vitro Phenotypic Expression Duration Unit | DAYS |
9 | 123 | TX | A1 | 4_-S9_C31.3 | 9 | MUTNDUR | In vitro Mutant Selection Duration | 10 |
10 | 123 | TX | A1 | 4_-S9_C31.3 | 10 | MUTNDU | In vitro Mutant Selection Duration Unit | DAYS |
11 | 123 | TX | A1 | 4_-S9_C31.3 | 11 | INCBTMP | Incubation Temperature | 37 |
12 | 123 | TX | A1 | 4_-S9_C31.3 | 12 | INCBTMPU | Incubation Temperature Unit | C |
13 | 123 | TX | A1 | 4_-S9_C31.3 | 13 | ATMRPH | Atmospheric Relative Humidity Percent | 50 |
14 | 123 | TX | A1 | 4_-S9_C31.3 | 14 | ATMCO2P | Atmospheric CO2 Percent | 5 |
15 | 123 | TX | A1 | 4_-S9_C31.3 | 15 | SPTOBID | Applicant defined tobacco identifier | CIG01a |
16 | 123 | TX | A1 | 4_-S9_C31.3 | 16 | EXPTYP | Exposure Type | SUBMERGED |
17 | 123 | TX | A1 | 4_-S9_C31.3 | 17 | SAMTYP | Sample Type | TOTAL PARTICULATE MATTER IN PBS |
18 | 123 | TX | A1 | 4_-S9_C31.3 | 18 | ITVNAM | Intervention Article Name | Tobacco ProdA |
19 | 123 | TX | A1 | 4_-S9_C31.3 | 19 | ITVTYPE | Intervention Article Type | PRODUCT |
20 | 123 | TX | A1 | 4_-S9_C31.3 | 20 | ITVCONC | Intervention Article Concentration | 31.3 |
21 | 123 | TX | A1 | 4_-S9_C31.3 | 21 | ITVCONCU | Intervention Article Concentration Unit | ug/mL |
22 | 123 | TX | A1 | 4_-S9_C31.3 | 22 | SPDEVID | Applicant defined device identifier | PUFFMASTER3K |
23 | 123 | TX | A1 | 4_-S9_C31.3 | 23 | SMKRGM | Smoking Regimen | NON-INTENSE REGIMEN |
24 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 24 | MTACTIND | Metabolic Activating Agent Name | NOT APPLICABLE |
25 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 25 | METACTFL | Presence of Metabolic Activation Flag | N |
26 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 26 | IVTDMIN | In vitro Treatment Duration Minimum | 3 |
27 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 27 | IVTDTRG | In vitro Treatment Duration Target | 3.5 |
28 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 28 | IVTDMAX | In vitro Treatment Duration Maximum | 4 |
29 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 29 | IVTDU | In vitro Treatment Duration Unit | HOURS |
30 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 30 | PHNXPDUR | In vitro Phenotypic Expression Duration | 2 |
31 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 31 | PHNXPDU | In vitro Phenotypic Expression Duration Unit | DAYS |
32 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 32 | MUTNDUR | In vitro Mutant Selection Duration | 10 |
33 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 33 | MUTNDU | In vitro Mutant Selection Duration Unit | DAYS |
34 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 34 | INCBTMP | Incubation Temperature | 37 |
35 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 35 | INCBTMPU | Incubation Temperature Unit | C |
36 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 36 | ATMRPH | Atmospheric Relative Humidity Percent | 50 |
37 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 37 | ATMCO2P | Atmospheric CO2 Percent | 5 |
38 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 38 | SPTOBID | Applicant defined tobacco identifier | CIG01a |
39 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 39 | EXPTYP | Exposure Type | SUBMERGED |
40 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 40 | SAMTYP | Sample Type | TOTAL PARTICULATE MATTER IN PBS |
41 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 41 | ITVNAM | Intervention Article Name | Tobacco ProdA |
42 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 42 | ITVTYPE | Intervention Article Type | PRODUCT |
43 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 43 | ITVCONC | Intervention Article Concentration | 31.3 |
44 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 44 | ITVCONCU | Intervention Article Concentration Unit | ug/mL |
45 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 45 | SPDEVID | Applicant defined device identifier | PUFFMASTER3K |
46 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 46 | SMKRGM | Smoking Regimen | NON-INTENSE REGIMEN |
47 | 123 | TX | A1CE | 4_-S9_C31.3_CE | 47 | SELAPIND | Selective Agent Present Indicator | N |
48 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 48 | MTACTIND | Metabolic Activating Agent Name | NOT APPLICABLE |
49 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 49 | METACTFL | Presence of Metabolic Activation Flag | N |
50 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 50 | IVTDMIN | In vitro Treatment Duration Minimum | 3 |
51 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 51 | IVTDTRG | In vitro Treatment Duration Target | 3.5 |
52 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 52 | IVTDMAX | In vitro Treatment Duration Maximum | 4 |
53 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 53 | IVTDU | In vitro Treatment Duration Unit | HOURS |
54 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 54 | PHNXPDUR | In vitro Phenotypic Expression Duration | 2 |
55 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 55 | PHNXPDU | In vitro Phenotypic Expression Duration Unit | DAYS |
56 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 56 | MUTNDUR | In vitro Mutant Selection Duration | 10 |
57 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 57 | MUTNDU | In vitro Mutant Selection Duration Unit | DAYS |
58 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 58 | INCBTMP | Incubation Temperature | 37 |
59 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 59 | INCBTMPU | Incubation Temperature Unit | C |
60 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 60 | ATMRPH | Atmospheric Relative Humidity Percent | 50 |
61 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 61 | ATMCO2P | Atmospheric CO2 Percent | 5 |
62 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 62 | SPTOBID | Applicant defined tobacco identifier | CIG01a |
63 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 63 | EXPTYP | Exposure Type | SUBMERGED |
64 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 64 | SAMTYP | Sample Type | TOTAL PARTICULATE MATTER IN PBS |
65 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 65 | ITVNAM | Intervention Article Name | Tobacco ProdA |
66 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 66 | ITVTYPE | Intervention Article Type | PRODUCT |
67 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 67 | ITVCONC | Intervention Article Concentration | 31.3 |
68 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 68 | ITVCONCU | Intervention Article Concentration Unit | ug/mL |
69 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 69 | SPDEVID | Applicant defined device identifier | PUFFMASTER3K |
70 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 70 | SMKRGM | Smoking Regimen | NON-INTENSE REGIMEN |
71 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 71 | SELAPIND | Selective Agent Present Indicator | Y |
72 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 72 | SELANAM | Selective Agent Name | Trifluorothymidine |
73 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 73 | SELCONC | Selective Agent Concentration | 5 |
74 | 123 | TX | A1TFT | 4_-S9_C31.3_TFT | 74 | SELCONCU | Selective Agent Concentration Unit | ug/mL |
75 | 123 | TX | A2 | 4_-S9_C500 | 75 | MTACTIND | Metabolic Activating Agent Name | NOT APPLICABLE |
76 | 123 | TX | A2 | 4_-S9_C500 | 76 | METACTFL | Presence of Metabolic Activation Flag | N |
77 | 123 | TX | A2 | 4_-S9_C500 | 77 | IVTDMIN | In vitro Treatment Duration Minimum | 3 |
78 | 123 | TX | A2 | 4_-S9_C500 | 78 | IVTDTRG | In vitro Treatment Duration Target | 3.5 |
79 | 123 | TX | A2 | 4_-S9_C500 | 79 | IVTDMAX | In vitro Treatment Duration Maximum | 4 |
80 | 123 | TX | A2 | 4_-S9_C500 | 80 | IVTDU | In vitro Treatment Duration Unit | HOURS |
81 | 123 | TX | A2 | 4_-S9_C500 | 81 | INCBTMP | Incubation Temperature | 37 |
82 | 123 | TX | A2 | 4_-S9_C500 | 82 | INCBTMPU | Incubation Temperature Unit | C |
83 | 123 | TX | A2 | 4_-S9_C500 | 83 | ATMHRP | Atmospheric Relative Humidity Percent | 50 |
84 | 123 | TX | A2 | 4_-S9_C500 | 84 | ATMCO2P | Atmospheric CO2 Percent | 5 |
85 | 123 | TX | A2 | 4_-S9_C500 | 85 | SPTOBID | Applicant-defined tobacco identifier | CIG01a |
86 | 123 | TX | A2 | 4_-S9_C500 | 86 | EXPTYP | Exposure Type | SUBMERGED |
87 | 123 | TX | A2 | 4_-S9_C500 | 87 | SAMTYP | Sample Type | TOTAL PARTICULATE MATTER IN PBS |
88 | 123 | TX | A2 | 4_-S9_C500 | 88 | ITVNAM | Intervention Article Name | Tobacco ProdA |
89 | 123 | TX | A2 | 4_-S9_C500 | 89 | ITVTYPE | Intervention Article Type | PRODUCT |
90 | 123 | TX | A2 | 4_-S9_C500 | 90 | ITVCONC | Intervention Article Concentration | 500 |
91 | 123 | TX | A2 | 4_-S9_C500 | 91 | ITVCONCU | Intervention Article Concentration Unit | ug/mL |
92 | 123 | TX | A2 | 4_-S9_C500 | 92 | SPDEVID | Applicant-defined device identifier | PUFFMASTER3K |
93 | 123 | TX | A2 | 4_-S9_C500 | 93 | SMKRGM | Smoking Regimen | NON-INTENSE REGIMEN |
94 | 123 | TX | A2CE | 4_-S9_C500_CE | 94 | MTACTIND | Metabolic Activating Agent Name | NOT APPLICABLE |
95 | 123 | TX | A2CE | 4_-S9_C500_CE | 95 | METACTFL | Presence of Metabolic Activation Flag | N |
96 | 123 | TX | A2CE | 4_-S9_C500_CE | 96 | IVTDMIN | In vitro Treatment Duration Minimum | 3 |
97 | 123 | TX | A2CE | 4_-S9_C500_CE | 97 | IVTDTRG | In vitro Treatment Duration Target | 3.5 |
98 | 123 | TX | A2CE | 4_-S9_C500_CE | 98 | IVTDMAX | In vitro Treatment Duration Maximum | 4 |
99 | 123 | TX | A2CE | 4_-S9_C500_CE | 99 | IVTDU | In vitro Treatment Duration Unit | HOURS |
100 | 123 | TX | A2CE | 4_-S9_C500_CE | 100 | INCBTMP | Incubation Temperature | 37 |
101 | 123 | TX | A2CE | 4_-S9_C500_CE | 101 | INCBTMPU | Incubation Temperature Unit | C |
102 | 123 | TX | A2CE | 4_-S9_C500_CE | 102 | ATMHRP | Atmospheric Relative Humidity Percent | 50 |
103 | 123 | TX | A2CE | 4_-S9_C500_CE | 103 | ATMCO2P | Atmospheric CO2 Percent | 5 |
104 | 123 | TX | A2CE | 4_-S9_C500_CE | 104 | SPTOBID | Applicant-defined tobacco identifier | CIG01a |
105 | 123 | TX | A2CE | 4_-S9_C500_CE | 105 | EXPTYP | Exposure Type | SUBMERGED |
106 | 123 | TX | A2CE | 4_-S9_C500_CE | 106 | SAMTYP | Sample Type | TOTAL PARTICULATE MATTER IN PBS |
107 | 123 | TX | A2CE | 4_-S9_C500_CE | 107 | ITVNAM | Intervention Article Name | Tobacco ProdA |
108 | 123 | TX | A2CE | 4_-S9_C500_CE | 108 | ITVTYPE | Intervention Article Type | PRODUCT |
109 | 123 | TX | A2CE | 4_-S9_C500_CE | 109 | ITVCONC | Intervention Article Concentration | 500 |
110 | 123 | TX | A2CE | 4_-S9_C500_CE | 110 | ITVCONCU | Intervention Article Concentration Unit | ug/mL |
111 | 123 | TX | A2CE | 4_-S9_C500_CE | 111 | SPDEVID | Applicant-defined device identifier | PUFFMASTER3K |
112 | 123 | TX | A2CE | 4_-S9_C500_CE | 112 | SMKRGM | Smoking Regimen | NON-INTENSE REGIMEN |
113 | 123 | TX | A2CE | 4_-S9_C500_CE | 113 | SELAPIND | Selective Agent Present Indicator | N |
114 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 114 | MTACTIND | Metabolic Activating Agent Name | NOT APPLICABLE |
115 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 115 | METACTFL | Presence of Metabolic Activation Flag | N |
116 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 116 | IVTDMIN | In vitro Treatment Duration Minimum | 3 |
117 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 117 | IVTDTRG | In vitro Treatment Duration Target | 3.5 |
118 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 118 | IVTDMAX | In vitro Treatment Duration Maximum | 4 |
119 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 119 | IVTDU | In vitro Treatment Duration Unit | HOURS |
120 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 120 | INCBTMP | Incubation Temperature | 37 |
121 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 121 | INCBTMPU | Incubation Temperature Unit | C |
122 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 122 | ATMHRP | Atmospheric Relative Humidity Percent | 50 |
123 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 123 | ATMCO2P | Atmospheric CO2 Percent | 5 |
124 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 124 | SPTOBID | Applicant-defined tobacco identifier | CIG01a |
125 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 125 | EXPTYP | Exposure Type | SUBMERGED |
126 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 126 | SAMTYP | Sample Type | TOTAL PARTICULATE MATTER IN PBS |
127 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 127 | ITVNAM | Intervention Article Name | Tobacco ProdA |
128 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 128 | ITVTYPE | Intervention Article Type | PRODUCT |
129 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 129 | ITVCONC | Intervention Article Concentration | 500 |
130 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 130 | ITVCONCU | Intervention Article Concentration Unit | ug/mL |
131 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 131 | SPDEVID | Applicant-defined device identifier | PUFFMASTER3K |
132 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 132 | SMKRGM | Smoking Regimen | NON-INTENSE REGIMEN |
133 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 133 | SELAPIND | Selective Agent Present Indicator | Y |
134 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 134 | SELANAM | Selective Agent Name | Trifluorothymidine |
135 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 135 | SELCONC | Selective Agent Concentration | 5 |
136 | 123 | TX | A2TFT | 4_-S9_C500_TFT | 136 | SELCONCU | Selective Agent Concentration Unit | ug/mL |
The applicant chose to define the REFID values to indicate the Duration of Exposure, the existence of S9 metabolic activation, the concentration of intervention article, and the presence of selective agent, such that a duration of 4 hours without S9 activation at a concentration of 31.3 ug/mL in the presence of TFT as the selective agent would be indicated as a REFID of 4_-S9_C31.3_TFT.
Row 1: | Shows the REFID for 4_-S9_C31.3_B_OS which has a LVLDESC of observational summary, where the study has recorded data for summary statistics based upon all CE and TFT plates as well as percent suspension growth at the concentration of 31.3 ug/mL (based upon the descendants of 4_-S9_C31.3_B_OS). |
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Row 2: | Shows the REFID for the experimental unit 4_-S9_C31.3_B (i.e., the suspension where the test article was added under test conditions described in set A1, at a concentration of 31.3 ug/mL) and that the percent suspension growth was measured for the 4-hour exposure without S9 metabolic activation. |
Row 3: | Shows the REFID for the trial set that represents the suspension without TFT. This REFID is the identifier for results attributed to all 3 CE colony plates (e.g., mean). |
Rows 4-6: | Show the REFIDs for the observational units (i.e., the identifiers for the plates where the suspension without TFT was added; thus, the CE colonies). |
Row 7: | Shows the REFID for the trial set that represents the suspension with TFT. This REFID is the identifier for results attributed to all 3 TFT colony plates. |
Rows 8-10: | Show the REFIDs for the observational units (i.e., the identifiers for the plates where the suspension with TFT was added; thus, the TFT colonies). |
Row 11: | Shows the REFID for 4_-S9_C500_B_OS which has a LVLDESC of observational summary, where the study has recorded data for summary statistics based upon all CE and TFT plates as well as percent suspension growth at the concentration of 500 ug/mL (based upon the descendants of 4_-S9_C500_B_OS). |
Row 12: | Shows the REFID for the experimental unit (i.e., the suspension where the test article was added under test conditions described in set A2, at a concentration of 500 ug/mL) and that the percent suspension growth was measured for the 4-hour exposure without S9 metabolic activation. |
Row 13: | Shows the REFID for the trial set that represents the suspension without TFT. This REFID is the identifier for results attributed to all 3 CE colony plates. |
Rows 14-16: | Show the REFIDs for the observational units (i.e., the identifiers for the plates where the suspension was added without TFT; thus, the CE colonies). |
Row 17: | Shows the REFID for the trial set that represents the suspension with TFT. This REFID is the identifier for results attributed to all 3 TFT colony plates. |
Rows 18-20: | Show the REFIDs for the observational units (i.e., the identifiers for the plates where the suspension was added with TFT; thus, the TFT colonies). |
relref.xpt
Row | STUDYID | SETCD | REFID | PARENT | LEVEL | LVLDESC |
---|---|---|---|---|---|---|
1 | 123 | A1 | 4_-S9_C31.3_B_OS | 1 | OBSERVATIONAL SUMMARY | |
2 | 123 | A1 | 4_-S9_C31.3_B | 4_-S9_C31.3_B_OS | 2 | EXPERIMENTAL UNIT/OBSERVATIONAL UNIT |
3 | 123 | A1CE | 4_-S9_C31.3_B_CE | 4_-S9_C31.3_B | 3 | TRIAL SET/OBSERVATIONAL SUMMARY |
4 | 123 | A1CE | 4_-S9_C31.3_B_CE_1 | 4_-S9_C31.3_B_CE | 4 | OBSERVATIONAL UNIT |
5 | 123 | A1CE | 4_-S9_C31.3_B_CE_2 | 4_-S9_C31.3_B_CE | 4 | OBSERVATIONAL UNIT |
6 | 123 | A1CE | 4_-S9_C31.3_B_CE_3 | 4_-S9_C31.3_B_CE | 4 | OBSERVATIONAL UNIT |
7 | 123 | A1TFT | 4_-S9_C31.3_B_TFT | 4_-S9_C31.3_B | 3 | TRIAL SET/OBSERVATIONAL SUMMARY |
8 | 123 | A1TFT | 4_-S9_C31.3_B_TFT_1 | 4_-S9_C31.3_B_TFT | 4 | OBSERVATIONAL UNIT |
9 | 123 | A1TFT | 4_-S9_C31.3_B_TFT_2 | 4_-S9_C31.3_B_TFT | 4 | OBSERVATIONAL UNIT |
10 | 123 | A1TFT | 4_-S9_C31.3_B_TFT_3 | 4_-S9_C31.3_B_TFT | 4 | OBSERVATIONAL UNIT |
11 | 123 | A2 | 4_-S9_C500_B_OS | 1 | OBSERVATIONAL SUMMARY | |
12 | 123 | A2 | 4_-S9_C500_B | 4_-S9_C500_B_OS | 2 | EXPERIMENTAL UNIT/OBSERVATIONAL UNIT |
13 | 123 | A2CE | 4_-S9_C500_B_CE | 4_-S9_C500_B | 3 | TRIAL SET/OBSERVATIONAL UNIT |
14 | 123 | A2CE | 4_-S9_C500_B_CE_1 | 4_-S9_C500_B_CE | 4 | OBSERVATIONAL UNIT |
15 | 123 | A2CE | 4_-S9_C500_B_CE_2 | 4_-S9_C500_B_CE | 4 | OBSERVATIONAL UNIT |
16 | 123 | A2CE | 4_-S9_C500_B_CE_3 | 4_-S9_C500_B_CE | 4 | OBSERVATIONAL UNIT |
17 | 123 | A2TFT | 4_-S9_C500_B_TFT | 4_-S9_C500_B | 3 | TRIAL SET/OBSERVATIONAL UNIT |
18 | 123 | A2TFT | 4_-S9_C500_B_TFT_1 | 4_-S9_C500_B_TFT | 4 | OBSERVATIONAL UNIT |
19 | 123 | A2TFT | 4_-S9_C500_B_TFT_2 | 4_-S9_C500_B_TFT | 4 | OBSERVATIONAL UNIT |
20 | 123 | A2TFT | 4_-S9_C500_B_TFT_3 | 4_-S9_C500_B_TFT | 4 | OBSERVATIONAL UNIT |
Dataset Wrapper Debug Message
Please add a row column to your dataset.
Row 6:
Row 14:
*= Plate contaminated
Row 1: | Shows results for the experimental unit A1 as shown in row 6 of Table 1, concentration 31.3, in the sample report for study 123 . The GTREFID aligns with the REFID for SETCD=A1 in the RELREF dataset, matching the test conditions of A1 in the TX dataset. |
---|---|
Rows 2-4: | Show results for each of three observational units within the trial set A1CE as shown in the three plates numbered 1, 2, and 3 under "CE Colonies, Plate Counts" on row 6 of Table 1 in the sample report for study 123. The GTREFIDs align with the REFID for SETCD=A1CE in the RELREF dataset, matching the test conditions of trial set A1CE in the TX dataset. From the A1CE entries in the TX dataset, you see there is no selective agent present on these plates. |
Row 5: | Shows the result for 4_-S9_C31.3_B_CE. Looking at the RELREF dataset, this REFID aligns with the SETCD A1CE in the TX dataset where the parameter codes indicate a suspension without TFT. This result (i.e., mean) is an observational summary attributed to all 3 CE colony plates because they are children of 4_-S9_C31.3_B_CE. |
Rows 6-8: | Show results for each of three observational units within the trial set A1TFT as shown in the three plates numbered 1, 2, and 3 under "TFT Colonies, Plate Counts" on row 6 of Table 1 in the sample report for study 123. The GTREFIDs align with the REFID for SETCD=A1TFT in the RELREF dataset, matching the test conditions of trial set A1TFT in the TX dataset. From the A1TFT entries in the TX dataset, you see the selective agent Trifluorothymidine is present on these plates in a concentration of 5 ug/mL. |
Rows 9-11: | Show results for the trial set A1TFT that represents the suspension with a 31.3 ug/mL of intervention article and with TFT. These results (i.e., mean, mutant frequency) are attributed to all 3 TFT colony plates. GTCOLSRT is populated with MEAN to distinguish this test from the Colony Numbers Per Plate of the individual plates. |
Row 12: | Shows results for 4_-S9_C31.3_B_OS. Looking at the RELREF dataset, this REFID aligns with the SETCD A1 in the TX dataset where the parameter codes indicate a dose concentration of 31.3 ug/mL. This result (i.e., relative total growth) is an observational summary attributed to all plates in the sixth row of the sample report table (the descendants of 4_-S9_C31.3_B_OS). |
Row 13: | Shows results for experimental unit A2 as shown in row 14 of Table 1, concentration 500, in the sample report for study 123. The GTREFID aligns with the REFID for SETCD=A2 in the RELREF dataset, matching the test conditions of trial set A2 in the TX dataset. |
Rows 14-16: | Show results for each of three observational units within the trial set A2CE as shown in the three plates numbered 1, 2, and 3 under "CE Colonies, Plate Counts" on row 14 of Table 1 in the sample report for study 123. The GTREFID aligns with the REFID for SETCD=A2CE in the RELREF dataset, matching the test conditions of trial set A2CE in the TX dataset. From the A2CE entries in the TX dataset, you see there is no selective agent present on these plates. |
Row 17: | Shows the result for 4_-S9_C500_B_CE. Looking at the RELREF dataset, this REFID aligns with the SETCD A2CE in the TX dataset where the parameter codes indicate a suspension with 500 ug/mL of intervention article but without TFT. This result (i.e., mean) is an observational summary attributed to all 3 CE colony plates because they are children of 4_-S9_C500_B_CE. |
Rows 18-20: | Show results for each of three observational units within the trial set A2TFT as shown in the three plates numbered 1, 2, and 3 under "TFT Colonies, Plate Counts" on row 14 of Table 1 in the sample report for study 123. The GTREFID aligns with the REFID for SETCD=A2TFT in the RELREF dataset, matching the test conditions of trial set A2TFT in the TX dataset. From the A2TFT entries in the TX dataset, you see the selective agent Trifluorothymidine is present on these plates in a concentration of 5 ug/mL. |
Rows 21-23: | Show results for the trial set A2TFT that represents the suspension with a 500 ug/mL of intervention article and with TFT. These results (i.e., mean, mutant frequency) are attributed to all 3 TFT colony plates. GTCOLSRT is populated with MEAN to distinguish this test from the Colony Numbers Per Plate of the individual plates. |
Row 24: | Shows results for 4_-S9_C500_B_CE_OS. Looking at the RELREF dataset, this REFID aligns with the SETCD A2 in the TX dataset where the parameter codes indicate a dose concentration of 500 ug/mL. This result (i.e., relative total growth) is an observational summary attributed to all plates in the fourteenth row of the sample report table (the descendants of 4_-S9_C500_B_CE_OS). |
gt.xpt
xx.xpt
Row | STUDYID | DOMAIN | GTSEQ | GTREFID | GTTESTCD | GTTEST | GTORRES | GTORRESU | GTCOLSRT | GTSTRESC | GTSTRESN | GTSTRESU | GTSPCCND | GTRUNID | GTDTC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 123 | GT | 1 | 4_-S9_C31.3_B | PSG | Percent Suspension Growth | 94 | % | 94 | 94 | % | PRECIPITATED | 1 | 2020-01-01 | |
2 | 123 | GT | 2 | 4_-S9_C31.3_B_CE_1 | CPP | Colony Numbers Per Plate | 148 | 148 | 148 | 1 | 2020-01-01 | ||||
3 | 123 | GT | 3 | 4_-S9_C31.3_B_CE_2 | CPP | Colony Numbers Per Plate | 140 | 140 | 140 | 1 | 2020-01-01 | ||||
4 | 123 | GT | 4 | 4_-S9_C31.3_B_CE_3 | CPP | Colony Numbers Per Plate | 143 | 143 | 143 | 1 | 2020-01-01 | ||||
5 | 123 | GT | 5 | 4_-S9_C31.3_B_CE | CPP | Colony Numbers Per Plate | 144 | MEAN | 144 | 144 | 1 | 2020-01-01 | |||
6 | 123 | GT | 6 | 4_-S9_C31.3_B_TFT_1 | CPP | Colony Numbers Per Plate | 46 | 1 | 2020-01-01 | ||||||
7 | 123 | GT | 7 | 4_-S9_C31.3_B_TFT_2 | CPP | Colony Numbers Per Plate | 59 | 1 | 2020-01-01 | ||||||
8 | 123 | GT | 8 | 4_-S9_C31.3_B_TFT_3 | CPP | Colony Numbers Per Plate | 69 | 1 | 2020-01-01 | ||||||
9 | 123 | GT | 9 | 4_-S9_C31.3_B_TFT | CPP | Colony Numbers Per Plate | 58 | MEAN | 1 | 2020-01-01 | |||||
10 | 123 | GT | 10 | 4_-S9_C31.3_B_TFT | MF | Mutant Frequency | 81 | /10^6 | 81 | 81 | /10^6 | 1 | 2020-01-01 | ||
11 | 123 | GT | 11 | 4_-S9_C31.3_B_TFT | IMF | Induced Mutant Frequency | 8 | /10^6 | 8 | 8 | /10^6 | 1 | 2020-01-01 | ||
12 | 123 | GT | 12 | 4_-S9_C31.3_B_OS | RTG | Relative Total Growth | 74 | % | 74 | 74 | % | 1 | 2020-01-01 | ||
13 | 123 | GT | 1 | 4_-S9_C500_B | PSG | Percent Suspension Growth | 103 | % | 103 | 103 | % | 1 | 2020-01-01 | ||
14 | 123 | GT | 2 | 4_-S9_C500_B_CE_1 | CPP | Colony Numbers Per Plate | 187 | 187 | 187 | 1 | 2020-01-01 | ||||
15 | 123 | GT | 3 | 4_-S9_C500_B_CE_2 | CPP | Colony Numbers Per Plate | 150 | 150 | 150 | 1 | 2020-01-01 | ||||
16 | 123 | GT | 4 | 4_-S9_C500_B_CE_3 | CPP | Colony Numbers Per Plate | CONTAMINATED | 1 | 2020-01-01 | ||||||
17 | 123 | GT | 5 | 4_-S9_C500_B_CE | CPP | Colony Numbers Per Plate | 169 | MEAN | 169 | 169 | 1 | 2020-01-01 | |||
18 | 123 | GT | 6 | 4_-S9_C500_B_TFT_1 | CPP | Colony Numbers Per Plate | 56 | 56 | 56 | 1 | 2020-01-01 | ||||
19 | 123 | GT | 7 | 4_-S9_C500_B_TFT_2 | CPP | Colony Numbers Per Plate | 66 | 66 | 66 | 1 | 2020-01-01 | ||||
20 | 123 | GT | 8 | 4_-S9_C500_B_TFT_3 | CPP | Colony Numbers Per Plate | 51 | 51 | 51 | 1 | 2020-01-01 | ||||
21 | 123 | GT | 9 | 4_-S9_C500_B_TFT | CPP | Colony Numbers Per Plate | 58 | MEAN | 58 | 58 | 1 | 2020-01-01 | |||
22 | 123 | GT | 10 | 4_-S9_C500_B_TFT | MF | Mutant Frequency | 68 | /10^6 | 68 | 68 | /10^6 | 1 | 2020-01-01 | ||
23 | 123 | GT | 11 | 4_-S9_C500_B_TFT | IMF | Induced Mutant Frequency | -4 | /10^6 | -4 | -4 | /10^6 | 1 | 2020-01-01 | ||
24 | 123 | GT | 12 | 4_-S9_C500_B_CE_OS | RTG | Relative Total Growth | 95 | % | 95 | 95 | % | 1 | 2020-01-01 |
Dataset Wrapper Debug Message
Please add a row column to your dataset.