NOTE: THIS SECTION MAY CHANGE . DEVICE DOMAIN MAY BE USED TO REPRESENT THE SMOKING MACHINE PARAMETERS
Fix MATRIX variable
Tobacco product stability study results are represented in PT. These are just the data that show the testing results under specific storage conditions and smoking regimens. The details of the regimen and storage conditions are shown in separate datasets that follow this example.
The smoking regimen is carried out by the smoking machine/device shown in SPDEVID (sponsor-defined device identifier).
The storage condition is represented in STOCONID (Storage condition identifier- this variable as created after consultation with our internal standards modeling team).
The smoking regimen is represented in PTREFID (we made up a value; we can update with something realistic)
We got buy-in on using a new variable, "PTMATRIX" (for the sample matrix), since the existing SDTM "specimen type" variable was not appropriate.
The following example illustrates how to represent results from HPHC testing of a tobacco product under study using the Product Testing (PT) domain. This testing is conduct on samples of the product of interest, and if applicable samples of comparison products. Each product tested would have it's own unique sponsor-defined value for SPTOBID to identify the product.
This example only shows test results for each constituent for one sample of one product that was tested. The sampling plan and testing plan including the number of samples of the products tested are determined by the sponsor. In reality, sponsors would have multiple product samples tested and those would be distinguished in the dataset. These sample identification information may be represented in PTREFID, and/ or PTSPID. In this example, SPTOBID indicated the product identification, and each sample of that product was numbered as Sample 1 thru Sample n. Many sponsor may use more specific codes to identify the source of product sample.
Rows 1-15:
Show the HPHC testing performed on one sample of the product with SPTOBID CIG01a. The test condition are represented in PTTSTCND.
Row 16:
Shows the HPHC testing performed on one sample for one ingredient using the CANDIAN INTENSE test conditions.
$titleHtml
pt.xpt
Row
STUDYID
DOMAIN
SPTOBID
SPDEVID
STOCONID
PTSEQ
PTREFID
PTCAS
PTTESTCD
PTTEST
PTCAT
PTSCAT
PTORRES
PTORRESU
PTSTRESC
PTSTRESN
PTSTRESU
PTSPEC
PTMETHOD
PTREPNUM
PTTPT
PTTPTNUM
PTDTC
1
Row
STUDYID
DOMAIN
SPTOBID
PTSEQ
PTREFID
PTCSREFID
PTTESTCD
Analyte
PTTSTDTL
PTCAT
HPHC vs other constituents
PTORRES
Unit
Result
PTSTRESN
PTSTRESU
Method
Smoking Regime
Lab
Limit of Quantitation
PTREPNUM
PTDTC
2
PTTEST
PTSCAT
PTORRESU
PTSTRESC
PTMETHOD
PTNAM
PTLLOQ
MATRIX
3
1
TOB07
PT
CIG01a
1
Batch 101
75-07-0
ACETALD
Acetaldehyde
QUANTITY
HPHC TESTING
HPHC
522
µg/cigarette
µg/cigarette
TL001
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
4
2
TOB07
PT
CIG01a
2
Batch 101
107-02-8
ACROL
Acrolein
QUANTITY
HPHC TESTING
HPHC
43
µg/cigarette
µg/cigarette
TL002
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
5
3
TOB07
PT
CIG01a
3
Batch 101
107-13-1
ACRLONI
Acrylonitrile
QUANTITY
HPHC TESTING
HPHC
7
µg/cigarette
µg/cigarette
TL006
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
6
4
TOB07
PT
CIG01a
4
Batch 101
92-67-1
AMNPHEN4
4-Aminobiphenyl
QUANTITY
HPHC TESTING
HPHC
1.2
ng/cigarette
ng/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
7
5
TOB07
PT
CIG01a
5
Batch 101
134-32-7
AMNPHTH1
1-Aminonaphthalene
QUANTITY
HPHC TESTING
HPHC
14
ng/cigarette
ng/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
8
TOB07
PT
CIG01a
6
Batch 101
134-32-7
AMNPHTH2
2-Aminonaphthalene
QUANTITY
HPHC TESTING
HPHC
8
ng/cigarette
ng/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
9
6
TOB07
PT
CIG01a
7
Batch 101
7664-41-7
NH4
Ammonia
QUANTITY
HPHC TESTING
HPHC
9
µg/cigarette
µg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
10
7
TOB07
PT
CIG01a
8
Batch 101
71-43-2
BENZ
Benzene
QUANTITY
HPHC TESTING
HPHC
33
µg/cigarette
µg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
11
8
TOB07
PT
CIG01a
9
Batch 101
50-32-8
BENZAP
Benzo[a]pyrene
QUANTITY
HPHC TESTING
HPHC
6.8
ng/cigarette
ng/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
12
9
TOB07
PT
CIG01a
10
Batch 101
630-08-0
CO
Carbon monoxide
QUANTITY
HPHC TESTING
HPHC
10.1
mg/cigarette
mg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
13
10
TOB07
PT
CIG01a
11
Batch 101
4170-30-3
CROTALD
Crotonaldehyde
QUANTITY
HPHC TESTING
HPHC
11
µg/cigarette
µg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
14
11
TOB07
PT
CIG01a
12
Batch 101
50-00-0
FORMALD
Formaldehyde
QUANTITY
HPHC TESTING
HPHC
27
µg/cigarette
µg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
15
12
TOB07
PT
CIG01a
13
Batch 101
78-79-5
ISOPRN
Isoprene
QUANTITY
HPHC TESTING
HPHC
320
µg/cigarette
µg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
16
13
TOB07
PT
CIG01a
14
Batch 101
1954-11-05
NIC
Nicotine
QUANITY
HPHC TESTING
HPHC
0.721
mg/cigarette
mg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
17
14
TOB07
PT
CIG01a
15
Batch 101
64091-91-4
NNK
4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone
QUANTITY
HPHC TESTING
HPHC
71
ng/cigarette
ng/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
18
15
TOB07
PT
CIG01a
16
Batch 101
16543-55-8
NNN
N-nitrosonornicotine
QUANTITY
HPHC TESTING
HPHC
85
ng/cigarette
ng/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
19
TOB07
PT
CIG01a
17
Batch 101
108-88-3
Toluene
QUANTITY
HPHC TESTING
HPHC
53
µg/cigarette
µg/cigarette
ISO METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
20
16
TOB07
PT
CIG01a
18
Batch 101
75-07-0
ACETALD
Acetaldehyde
QUANTITY
HPHC TESTING
HPHC
1552
µg/cigarette
µg/cigarette
CANADIAN INTENSE METHOD
TOBACCO LAB 1
1
2022-09-30
SMOKE
21
17
TOB07
PT
CIG01a
19
Batch 101
7664-41-7
AMMONIA
Ammonia
Quantity
HPHC TESTING
HPHC
956
µg/g
612
µg/cigarette
-
1
2022-09-30
FILLER
Dataset Debug Messages
There are four leading, trailing, or non-breaking spaces in the dataset.
There seem to be multiple domains (STUDYID, <br/>, TOB07) present in the dataset.
There seems to be a variable name missing in the heading row.
the old example - from the original HPHC (as opposed to the one with the device and smoking regimen)
Rows 1-15:
Show the HPHC testing performed on one sample of the product with SPTOBID CIG01a. The test condition are represented in PTTSTCND.
Row 16:
Shows the HPHC testing performed on one sample for one ingredient using the CANDIAN INTENSE test conditions.
pt.xpt
pt.xpt
Row
STUDYID
DOMAIN
SPTOBID
SPDEVID
STOCONID
PTSEQ
PTREFID
PTCAS
PTTESTCD
PTTEST
PTCAT
PTSCAT
PTORRES
PTORRESU
PTSTRESC
PTSTRESN
PTSTRESU
PTSPEC
PTMETHOD
PTREPNUM
PTTPT
PTTPTNUM
PTDTC
1
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
1
75-07-0
ACETALD
Acetaldehyde
HPHC TESTING
HPHC
1639
ug/cigarette
1639
1639
ug/cigarette
SMOKE
ISO INTENSE METHOD
1
Week 0
1
2022-09-30
2
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
2
107-02-8
ACROL
Acrolein
HPHC TESTING
HPHC
154
ug/cigarette
154
154
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
3
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
3
107-13-1
ACRLONI
Acrylonitrile
HPHC TESTING
HPHC
ISO INTENSE METHOD
1
2022-09-30
4
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
4
92-67-1
AMNPHEN4
4-Aminobiphenyl
HPHC TESTING
HPHC
ISO INTENSE METHOD
1
2022-09-30
5
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
5
134-32-7
AMNPHTH1
1-Aminonaphthalene
HPHC TESTING
HPHC
ISO INTENSE METHOD
1
2022-09-30
6
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
6
7664-41-7
NH4
Ammonia
HPHC TESTING
HPHC
29.2
ug/cigarette
29.2
29.2
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
7
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
7
71-43-2
BENZ
Benzene
HPHC TESTING
HPHC
ISO INTENSE METHOD
1
2022-09-30
8
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
8
50-32-8
BENZAP
Benzo[a]pyrene
HPHC TESTING
HPHC
30.5
ug/cigarette
30.5
30.5
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
9
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
9
630-08-0
CO
Carbon monoxide
HPHC TESTING
HPHC
28.2
ug/cigarette
28.2
28.2
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
10
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
10
4170-30-3
CROTALD
Crotonaldehyde
HPHC TESTING
HPHC
0.01
0.01
0.01
ISO INTENSE METHOD
1
2022-09-30
11
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
11
50-00-0
FORMALD
Formaldehyde
HPHC TESTING
HPHC
83.2
ug/cigarette
83.2
83.2
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
12
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
12
78-79-5
ISOPRN
Isoprene
HPHC TESTING
HPHC
ISO INTENSE METHOD
1
2022-09-30
13
TOB07
PT
CIG01a
PUFFMASTER3K
E-Liquid Standard (Long Term) Condition
13
Medium Intensity Regimen
1954-11-05
NIC
Nicotine
HPHC TESTING
HPHC
1.71
ug/cigarette
1.71
1.71
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
14
TOB07
PT
CIG01a
PUFFMASTER3K
E-Liquid Standard (Long Term) Condition
14
Medium Intensity Regimen
64091-91-4
NNK
Nicotine-derived Nitrosamine Ketone
HPHC TESTING
HPHC
ISO INTENSE METHOD
1
2022-09-30
15
TOB07
PT
CIG01a
PUFFMASTER3K
E-Liquid Standard (Long Term) Condition
15
Medium Intensity Regimen
16543-55-8
NNN
N-nitrosonornicotine
HPHC TESTING
HPHC
284
ug/cigarette
284
284
ug/cigarette
ISO INTENSE METHOD
1
2022-09-30
16
TOB07
PT
CIG01a
E-Liquid Standard (Long Term) Condition
16
75-07-0
ACETALD
Acetaldehyde
HPHC TESTING
HPHC
1569
ug/cigarette
1569
1569
ug/cigarette
CANADIAN INTENSE METHOD
1
2022-09-30
$warningHtml
Dataset Wrapper Debug Message
Please add a row column to your dataset.
Next ,we use DU (device-in use properties/settings) for smoking regimen. Note that the separate DI (device identifiers) dataset is needed to show identifying parameters of the "PUFFMASTER3K" smoking machine. We cannot have DU without also including DI).
di.xpt
di.xpt
Row
STUDYID
DOMAIN
SPDEVID
DISEQ
DIPARMCD
DIPARM
DIVAL
1
TOB07
DI
PUFFMASTER3K
1
DEVTYPE
Device Type
Smoking Machine
2
TOB07
DI
PUFFMASTER3K
2
MANUF
Manufacturer
Acme
3
TOB07
DI
PUFFMASTER3K
3
TRADENAM
Trade Name
PuffMaster 3000
$warningHtml
Details of the smoking regimen are represented as device in-use properties, linked to the stability data in PT above by matching values of PTREFID/DUREFID = "Medium Intensity Regimen" (We will update with a realistic value for the regimen, with input).
du.xpt
du.xpt
Row
STUDYID
DOMAIN
SPDEVID
DUSEQ
DUREFID
DUGRPID
DUTESTCD
DUTEST
DUORRES
DUORRESU
DUSTRESC
DUSTRESN
DUSTRESU
1
TOB07
DU
PUFFMASTER3K
1
Medium Intensity Regimen
PUFFPROF
Puff Profile
SQUARE
SQUARE
2
TOB07
DU
PUFFMASTER3K
2
Medium Intensity Regimen
PUFFDUR
Puff Duration
1.25
sec
1.25
1.25
sec
3
TOB07
DU
PUFFMASTER3K
3
Medium Intensity Regimen
PUFFINT
Puff Interval
3
PUFF/min
3
3
PUFF/min
4
TOB07
DU
PUFFMASTER3K
4
Medium Intensity Regimen
PUFFBLCK
Puff Block
25
%
25
25
%
5
TOB07
DU
PUFFMASTER3K
5
Medium Intensity Regimen
NUMPUFF
Total Number of Puffs
200
PUFF
200
200
PUFF
6
TOB07
DU
PUFFMASTER3K
6
Medium Intensity Regimen
PUFFVOL
Puff Volume
10
mL
10
10
mL
7
TOB07
DU
PUFFMASTER3K
7
Medium Intensity Regimen
PUFFRNG
Puff Range
100-200
100-200
8
TOB07
DU
PUFFMASTER3K
8
Medium Intensity Regimen
1
PUFFPAUS
Puff Pause
60
s
60
60
s
9
TOB07
DU
PUFFMASTER3K
9
Medium Intensity Regimen
1
PUFFPINT
Puff Pause Interval
10
PUFF
10
10
PUFF
$warningHtml
Finally, we assume we still need to parse out storage conditions of "E-Liquid Standard (Long Term) Condition".Details of the storage conditions are represented in the Environmental Storage Conditions (ES) dataset.
The variable STOCONID (Storage Condition ID) = "E-Liquid Standard (Long Term) Condition". Each of the parameters defining that storage condition are represented in ESPARMCD/ESPARM, with values and units shown in ESVAL/ESVALU.
These values were made up, but we assume they'd look something like this.