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mb.xpt
Rows 1-2: Show the screening, followed by confirmatory detection of Influenza A virus RNA in a nasal specimen by Rapid PCR test. Row 3: Shows viral load of the previously detected Influenza A virus RNA.
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Row STUDYID DOMAIN USUBJID MBSEQ MBGRPID MBTESTCD MBTEST MBTSTDTL MBTSTOPO MBCAT MBORRES MBORRESU MBSTRESC MBSTRESN MBSTRESU MBSPEC MBLOC MBMETHOD VISITNUM VISIT MBDTC 1 ABC MB ABC-001 1 1 INFARNA Influenza A RNA DETECTION SCREEN MICROBIOLOGY YES YES YES MUCUS NOSTRIL RAPID PCR
1 SCREEN 2018-06-01 2 ABC MB ABC-001 3 1 INFARNA Influenza A RNA DETECTION CONFIRM MICROBIOLOGY YES YES YES log 10 IU/mL
MUCUS NOSTRIL RAPID PCR
1 SCREEN 2018-06-01 3 ABC MB ABC-001 1 2 INFARNA Influenza A RNA VIRAL LOAD
QUANTIFY MICROBIOLOGY 4.5 log 10 copies/mL 4.5 4.5 log 10 copies/mL MUCUS NOSTRIL QUANTITATIVE REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION
1 SCREEN 2018-06-01
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Option 1 - for the quantification 2nd step, use --TSTOPO since we already proposed controlled terminology
Note: if I remember correctly we specifically avoided the term "quantification" because the test can be "semi, pseudo, or fully quantitative", we found this term just toooo vague.
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mb.xpt
Row STUDYID DOMAIN USUBJID ISSEQ ISGRPID ISTESTCD ISTEST ISBDAGNT ISTSTOPO ISCAT ISORRES ISORRESU ISSTRESC ISSTRESN ISSTRESU ISMETHOD VISITNUM VISIT MBDTC 1 ABC MB ABC-001 1 1 Anti-microbial IgM Antibody SARS-CoV-2 SCREEN MICROBIOLOGY YES YES YES EIA 1 SCREEN 2018-06-01 2 ABC MB ABC-001 3 1 Anti-microbial IgM Antibody SARS-CoV-2 QUANTIFY MICROBIOLOGY 350 Titer 350 350 Titer
EIA 1 SCREEN 2018-06-01
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