| Note |
|---|
This example is currently in draft. |
Description of the context of the example for colleagues:
This example shows findings from an assessment of the unique pattern of allelic variation in genes of human leukocyte antigens (HLA), for purposes such as selecting cell, tissue and organ donors, diagnosing autoimmune diseases, determining the risk of adverse drug reactions, or to guide immunotherapies. HLA Nomenclature @ hla.alleles.orgAn arbitrary identifier for the allele is represented in GFCOPYID. Patterns of HLA allele sequences are reported as short codes from a publicly available reference database.
| Dataset wrap |
|---|
|
| Rowcaps |
|---|
6 914:| 16: | Show the characterization of the unique pattern of sequence variation for the allele of the HLA gene of interest represented in GFSYM. | | Rows 10, 12-14: | Show attempted assessments for which results could not be generated due to sequence overlap with the detected DRB1 allele. |
|
| Dataset2 |
|---|
| #SPDEVID| NHOID | GFGRPID | GFSPID | GFLNKID | GFLNKGRP | | GFTESTCD | GFTEST | GFTSTDTL | GFORRES | GFSYM | GFSYMTYP | GFCOPYID | GFSTAT | GFREASND |
GFXFN | GFRUNID | GFANMETH | GFBLFL | GFDRVFL | GFLLOQ | GFREPNUM | VISITNUM | VISIT | VISITDY | GFDTC | GFDY |
GFTPTGFTPTNUM | GFELTM | GFTPTREF | GFRFTDTC | | 1 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | A*02:TSXZ | HLA-A | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 |
9/16/2023| 2023-09-16 | -2 | | 2 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | A*03:ABSAX | HLA-A | GENE WITH PROTEIN PRODUCT | 2 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 3 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | B*18:TXYF | HLA-B | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 4 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | B*38:01 | HLA-B | GENE WITH PROTEIN PRODUCT | 2 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 5 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | C*07:AAEPN | HLA-C | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 6 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | C*12:AAGWE | HLA-C | GENE WITH PROTEIN PRODUCT | 2 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 6 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | DRB1*07:ACEUA | HLA-DRB1 | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 7 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | DRB1*14:ABZZV | HLA-DRB1 | GENE WITH PROTEIN PRODUCT | 2 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 9 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | DRB3*01:XX | HLA-DRB3 | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 10 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE |
| HLA-DRB3 | GENE WITH PROTEIN PRODUCT | 2 | NOT DONE | DRB3* | ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 11 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | DRB4*01:FVUU | HLA-DRB4 | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 12 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE |
| HLA-DRB4 | GENE WITH PROTEIN PRODUCT | 2 | NOT DONE | DRB4* | ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 13 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE |
| HLA-DRB5 | GENE WITH PROTEIN PRODUCT | 1 | NOT DONE | DRB5* | ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 14 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE |
| HLA-DRB5 | GENE WITH PROTEIN PRODUCT | 2 | NOT DONE | DRB5* | ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 15 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | DQB1*02:ACBXN | HLA-DQB1 | GENE WITH PROTEIN PRODUCT | 1 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 | | 16 | Study-123 | GF | S123-001 | 1 | HGA4567 | VARPROF | Variant Profile | ALLELE TYPE | DQB1*05:ACEDB | HLA-DQB1 | GENE WITH PROTEIN PRODUCT | 2 |
|
| ACME Genomics | DNA | SANGER SEQUENCING | -1 | SCREENING | -1 | 2023-09-16 | -2 |
|
|