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Model system serology exampleRequested by Dan and Joleen.

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titleIn Process

Fc receptor definition

Fc receptor is a antibody receptor involved in antigen recognition which is located at the membrane of certain immune cells including B lymphocytes, natural killer cells, macrophages, neutrophils, and mast cells. Such receptors recognize Fc fragment of antibodies and that is the name of Fc receptor derived from. Fc receptors binding to antibodies that are attached to infected cells or invading pathogens contributes to the protective functions of the immune system.Their activity stimulates phagocytic or cytotoxic cells to destroy microbes, or infected cells by antibody-mediated phagocytosis or antibody-dependent cell-mediated cytotoxicity.

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There’s some difficulty in modeling this since there are basically two binding targets of the antibody – 1.) the antigen via the variable region of the antibody and 2.) The Fc receptor via the constant region of the antibody. A further subtlety is that constant regions of the antibodies can bind to multiple FcR’s, so it’s not like we can say we are measuring IgG1-antigen complex (ISTEST)  binding to the FcR (ISBDAGNT). Modeled this would also mean we’d either blow ISTESTCD terminology or need a work-around such that antibody-antigen complexes could be listed in the SUPPIS.

Function of Antibodies (Immunoglobulins) - Learn Microbiology OnlineImage Added

The FC receptors, complement proteins, NK and phagocytes are all downstream effectors or cells that are recruited/activated by the FC region of the antibody, whether or not the effector is binding to the FC region is irrelevant. I think only complement 1B binds to the FC region, as well as the various Fc Receptors. The point is that they all are FC-medicated antibody effectors - perhaps this could be our new variable. 

If our end goal is to quantify the antibodies:

ISSPEC
Dataset wrap
ISGRPID
Dataset2
hi1styleyellow
hi1column ISBDAGNT
tableidIS table 1

Row

STUDYID

DOMAIN

USUBJID

SPDEVID

ISSEQ

EXAMPLES

(not a variable)

ISTESTCD

ISTEST

ISBDAGT

ISBDAGNT

Fc-Mediated Antibody Effectors/ISFCABEFISTSTDTL

ISORRES

ISORRESU

ISSTRESC

ISSTRESN

ISSTRESU

ISMETHOD

ISDTC

1

ABC

IS

ABC-01-201

ABC001

example 1

1

GR3A158V

Functional IgG Antibody

Influenza A H1 Hemagglutinin

Fc Gamma Receptor IIIa Polymorphism 158V

IgG-Bound Influenza A H1 Hemagglutinin

(or Other types of Fc receptors)


36920

mdFI


Luminex?2013-08-26

1

ABC

IS

ABC-01-201

ABC001

example 2


Functional IgG AntibodyInfluenza A H1 HemagglutininComplement Protein System (i.e. Complement 3B, complement 3A, Complement Attack Complex)





1

ABC

IS

ABC-01-201

ABC001

2

1

example 3


Functional IgG AntibodyInfluenza A H1 HemagglutininCells (i.e. Neutrophils/Macrophages), for cell-dependent immune response

Opsonization Index (Ine to have to look at the test detail values)




Antibody-Dependent Cellular Phagocytosis ADCP);

Antibody-dependent cellular cytotoxicity (ADCC)


If our end goal is to quantify the Fc receptors:

Dataset wrap
Dataset2
hi1styleyellow
hi1column ISBDAGNT
tableidIS table 1

Row

STUDYID

DOMAIN

USUBJID

SPDEVID

ISSEQ

ISTESTCD

ISTEST

NSV

ISBDAGNT

ISTSTDTL

ISORRES

ISORRESU

ISSTRESC

ISMETHOD

ISDTC

1

ABC

IS

ABC-01-201

ABC001

1

GR3A158F


Fc Gamma Receptor IIIa

Polymorphism
158F
158V

IgG

-Bound

bound Influenza A H1 Hemagglutinin

31121

36920

mdFI



2013-08-26

Questions:

  1. Is this a flow cytometry test? if so, should this be handled by CP? do you need to represent info such as "activated", gating?
  2. How many receptor polymorphisms are there?
  3. Before we agree to map this to IS, can we try to flash out the ISTESTs as much as possible for this type of assays?

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