When an entire examination (e.g., Laboratory Test Results (LB)), a group of tests
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Occasionally data that are intended to be numeric are collected with characters attached that cause the character-to-numeric conversion to fail. For example, numeric cell counts in the source data may be specified with a greater than (>) or less than (<) sign attached (e.g., >10,000, <1). In these cases, the value with the greater than (>) or less than (<) sign attached should be moved to the --STRESC variable, and --STRESN should be null. The rules for modifying the value for analysis purposes should be defined in the analysis plan and a numeric value should only be imputed in the ADaM datasets. If the value in --STRESC has different units, the greater than (>) or less than (<) sign should be maintained. See Example 1, Rows 11 and 12Figure. Original to Standardized Results
When the original measurement or finding is a selection from a defined codelist, in general, the --ORRES and --STRESC variables contain results in decoded format (i.e., the textual interpretation of whichever code was selected from the codelist). In some cases where the code values in the codelist are statistically meaningful standardized values or scores, which are defined by sponsors or by valid methodologies such as SF36 questionnaires, the --ORRES variables will contain the decoded format, whereas the --STRESC variables as well as the --STRESN variables will contain the standardized values or scores.
Occasionally data that are intended to be numeric are collected with characters attached that cause the character-to-numeric conversion to fail. For example, numeric cell counts in the source data may be specified with a greater than (>) or less than (<) sign attached (e.g., >10,000, <1). In these cases, the value with the greater than (>) or less than (<) sign attached should be moved to the --STRESC variable, and --STRESN should be null. The rules for modifying the value for analysis purposes should be defined in the analysis plan and a numeric value should only be imputed in the ADaM datasets. If the value in --STRESC has different units, the greater than (>) or less than (<) sign should be maintained. See Example 1, Rows 11 and 12
hematology or urinalysis), or an individual test (e.g., glucose) is not done for a USUBJID, POOLID, or SPTOBID and this information is explicitly captured with or without the reason for not collecting the information, record(s) can be created in the dataset to represent these data.
In such cases, applicants may include:
- individual records for each test not done for each subject or pool; or
- one record for each subject or pool for a group of tests that were not done. In such cases:
- The paired values of --TESTCD and --TEST will represent a general description of testing in scope for the domain and will be used for all groupings of not done tests within the domain.
- --TESTCD will be the domain code concatenated with the word "ALL".
- --TEST will be the domain description per controlled terminology.
- --CAT will represent the group of tests not done.
- --ORRES will be null.
- --STAT will be "NOT DONE".
- --REASND will be the reason the group of tests was not done, if collected.
For example, if a group of hematology or urinalysis tests represented in the LB domain are not done for a subject, then:
USUBJID | LBTESTCD | LBTEST | LBCAT | LBORRES | LBSTAT | LBREASND |
---|
ABC-001 | LBALL | Laboratory Test Results | HEMATOLOGY |
| NOT DONE |
|
ABC-001 | LBALL | Laboratory Test Results | URINALYSIS |
| NOT DONE | No urine specimen present |