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changes.mady.by.user Christine Connolly

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Namegf
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Rows 1, 6:Show the variant impact classification, a categorization of the phenotypic or clinical significance of the genomic variation, of the BAP1 and CYP2D6 genes respectively. 
Rows 2, 7:

Show the predicted amino acid change based change based on sequence analysis of the genomic variation in the BAP1 and CYP2D6 genes respectively. 

Rows 3, 8:Show the predicted coding sequence change based on sequence analysis of the genomic variation in the BAP1 and CYP2D6 genes respectively.  
Rows 4, 9:

Show the read depth, the total number of times the genes loci were sequenced, for BAP1 and CYP2D6 respectively.

Rows 5, 10:Show the variant read depth/read depth, the relative measurement of the variant read depth to total read depth of the BAP1 and CYP2D6 genes loci respectively, as percentages. 
Dataset2
RowSTUDYIDDOMAINUSUBJIDGFSEQGFREFIDGFTESTCDGFTESTGFTSTDTLGFORRESGFORRESUGFSTRESCGFSTRESNGFSTRESUGFGENREFGFCHROMGFSYMGFSYMTYPGFGENLOCGFXFNGFNAMGFSPECGFMETHODVISITNUMVISITVISITDYGFDTCGFDY
1GR123GF100001TRF001338SHRTVARShort VariationVARIANT IMPACT CLASSIFICATIONknown
known

GRCh37.753BAP1GENE WITH PROTEIN PRODUCT52438573/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
2GR123GF100002TRF001338SHRTVARShort VariationPREDICTED AMINO ACID CHANGER383fs*15
R383fs*15

GRCh37.753BAP1GENE WITH PROTEIN PRODUCT52438573/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
3GR123GF100003TRF001338SHRTVARShort VariationPREDICTED CODING SEQUENCE CHANGE1145_1146insG
1145_1146insG

GRCh37.753BAP1GENE WITH PROTEIN PRODUCT52438573/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
4GR123GF100004TRF001338SHRTVARShort VariationREAD DEPTH262
262

GRCh37.753BAP1GENE WITH PROTEIN PRODUCT52438573/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
5GR123GF100005TRF001338SHRTVARShort VariationVARIANT READ DEPTH/READ DEPTH20%2020%GRCh37.753BAP1GENE WITH PROTEIN PRODUCT52438573/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
6GR123GF100006TRF001338SHRTVARShort VariationVARIANT IMPACT CLASSIFICATIONunknown
unknown

GRCh37.7522CYP2D6GENE WITH PROTEIN PRODUCT42525085/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
7GR123GF100007TRF001338SHRTVARShort VariationPREDICTED AMINO ACID CHANGEW152fs*2
W152fs*2

GRCh37.7522CYP2D6GENE WITH PROTEIN PRODUCT42525085/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
8GR123GF100008TRF001338SHRTVARShort VariationPREDICTED CODING SEQUENCE CHANGE454_454delA
454_454delA

GRCh37.7522CYP2D6GENE WITH PROTEIN PRODUCT42525085/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
9GR123GF100009TRF001338SHRTVARShort VariationREAD DEPTH162
162

GRCh37.7522CYP2D6GENE WITH PROTEIN PRODUCT42525085/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252
10GR123GF1000010TRF001338SHRTVARShort VariationVARIANT READ DEPTH/READ DEPTH51%5151%GRCh37.7522CYP2D6GENE WITH PROTEIN PRODUCT42525085/compbio/analysis/120718_SN855_0084_AD13D5ACXX_LCNL-361/sampleAnalysis/sample18.TRF001338.01/TRF001338.01.vars.final.xmlACME XYZDNATARGETED GENOME SEQUENCING1SCREENING12022-01-252