Variable Name | Variable Label | Type | Controlled Terms, Codelist, or Format | Role | | Core |
|---|
STUDYID | Study Identifier | Char |
| Identifier | Unique identifier for a study. | Req |
DOMAIN | Domain Abbreviation | Char | GT | Identifier | Two-character abbreviation for the domain. | Req |
GTSEQ | Sequence Number | Num |
| Identifier | The sequence number must be unique for each record within a domain. Sequence number given to ensure uniqueness of records within a domain. May be any valid number. | Req |
| Reference ID | Char |
| Identifier | A sequence of characters used to uniquely identify a source of information (e.g., lab specimen, petri dish, flask, well, group of petri dishes, group of flasks, an entire assay). | Req |
GTTESTCD | Lab Test or Examination Short Name | Char | (GTTESTCD)jira | showSummary | false |
|---|
| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-657 |
|---|
| | Topic | Short name of the measurement, test, or examination described in GTTEST. It can be used as a column name when converting a dataset from a vertical to a horizontal format. The value in GTTESTCD | Jira |
|---|
| showSummary | false |
|---|
| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-93 |
|---|
|
cannot be longer than 8 characters, nor can it start with a number (e.g., "1TEST" is not valid). GTTESTCD cannot contain characters other than letters, numbers, or underscores. Examples: RVERT, CYTOTOX. | Req |
GTTEST | Lab Test or Examination Name | Char | (GTTEST) | Synonym Qualifier | Long name for GTTESTCD. The value in GTTEST cannot be longer than 40 characters. Examples: Revertants, Cytotoxicity. | Req |
GTORRES | Result or Findings as Collected | Char |
| Result Qualifier | Result of the measurement or finding as originally received or collected. | Exp |
GTORRESU | Unit of the Original Result | Char | (UNIT) | Variable Qualifier | The unit for the original result. The unit of the original result should be mapped to a synonymous unit on the Controlled Terminology list. | Exp |
GTCELLEV| Jira |
|---|
showSummary | false| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-81 |
|---|
| Number of Cells Evaluated | Num |
| Result Qualifier | The number of cells evaluated. | Perm |
GTCOLSRT | Collected Summary Result Type | Char | (COLSTYP) | Variable Qualifier | Used to indicate the type of collected summary result. | Jira |
|---|
| showSummary | false |
|---|
| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-493 |
|---|
|
| Jira |
|---|
| showSummary | false |
|---|
| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-492 |
|---|
|
For example, MAXIMUM, MINIMUM, and MEAN. | Perm |
GTSTRESC | Standardized Result in Character Format | Char |
| Result Qualifier | Contains the result value for all findings, copied or derived from GTORRES in a standard format or standard units. GTSTRESC should store all results or findings in character format; if results are numeric, they should also be stored in numeric format in GTSTRESN. For example, if a test has results NONE, NEG, and NEGATIVE in GTORRES and these results effectively have the same meaning, they could be represented in standard format in GTSTRESC as NEGATIVE. For other examples, see general assumptions. | Exp |
GTSTRESN | Standardized Result in Numeric Format | Num |
| Result Qualifier | Used for numeric results or findings in standard format; contains the numeric form of GTSTRESC. GTSTRESN should store all numeric test results or findings. | Exp |
GTSTRESU | Unit of the Standardized Result | Char | (UNIT) | Variable Qualifier | Standardized unit used for GTSTRESC, GTSTRESN, GTSTRLO, and GTSTRHI. | Exp |
GTSTAT | Completion Status | Char | (ND) | Record Qualifier | Used to indicate when a test is not done or result is missing. Should be null if a result exists in GTORRES. | Perm |
GTREASND | Reason Not Done | Char |
| Record Qualifier | Describes why GTSTAT is NOT DONE, such as BROKEN EQUIPMENT or SPECIMEN LOST. | Perm | GTSPEC | Specimen Material Type | Char | Record Qualifier | The type of sample material taken from a product or biological entity.| Jira |
|---|
| showSummary | false |
|---|
| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-448 |
|---|
|
"SERUM", "PLASMA", "URINE", "DNA", "RNA". | Perm |
GTSPCCND | Specimen Condition | Char | (SPECCOND) | Record Qualifier | Free or standardized text describing the condition of the specimen. Example: PRECIPITATION PRESENT, CONTAMINATED, etc. If multiple conditions are present on a sample, concatenate the values with a semicolon and no spaces as a separator. | Perm |
GTSPCUFL | Specimen Usability for the Test | Char | (NY) | Record Qualifier | Describes the usability of the specimen for the test. Should be N if the specimen is not usable; otherwise it should be null. | Perm |
GTMETHOD | Method of Test or Examination | Char |
| Record Qualifier | Method of the test or examination. Examples: MANUALLY COUNTED, INSTRUMENT COUNTED. | Perm| Jira |
|---|
| showSummary | false |
|---|
serverIssue Tracker (JIRA) | | serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-503 |
|---|
|
GTRUNID | Run ID | Char |
| Record Qualifier | A sequence of characters used to uniquely identify a particular run of a test on a particular batch of samples. | Perm |
GTEXCLFL | Exclusion Flag | Char | (NY) | Record Qualifier | Y if the result should be excluded from all calculations, otherwise null. | Perm |
GTREASEX | Reason for Exclusion | Char |
| Record Qualifier | The reason the result should be excluded from all calculations. Used only when GTEXCLFL is Y. | Perm |
GTDTC | Date/Time of Collection | Char | ISO 8601 datetime or interval | Timing | The date or date and time of the assessment or the specimen or data collection | Jira |
|---|
| showSummary | false |
|---|
| server | Issue Tracker (JIRA) |
|---|
| serverId | 85506ce4-3cb3-3d91-85ee-f633aaaf4a45 |
|---|
| key | TOBA-449 |
|---|
|
represented in a standardized character format. For an Ames test, this is the date the bacterial culture is plated. | Perm |