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Comment: Fixed model 3, added covariates to dataset

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Definexmltable
DatasetADCVNTP
LevelVariable
PurposeAnalysis
NameVariable
Variable NameVariable LabelTypeCodelist/Controlled Terms/FormatSourceDerivation/Comment
STUDYIDStudy IdentifierChar

CV.STUDYID


USUBJIDUnique Subject IdentifierChar

CV.USUBJID


BRTHDTDate of BirthNumDate9.

ADSL.BRTHDT


AGEAAGEAnalysis AgeNum

ADSL.AAGE


AGEUAge UnitCharYEARS

ADSL.AGEU


SEX

SexChar(SEX)

DM.SEX


RACE

RaceNum(RACE)

DM.RACE


TRTSDT

Date of First Exposure to Treatment

Numdate9ADSL.TRTSDT
TRT01P

Planned Treatment for Period 01

CharDrug A; Drug BADSL.TRT01P
TRT01A

Actual Treatment for Period 01

CharDrug A; Drug BADSL.TRT01A

ITTFL

Intent-To-Treat Population Flag

Char

Y; N

ADSL.ITTFL


BSASCBody Surface Area at ScreeningNum


ADSL.BSASC


HEIGHT

Height (cm)

Num



Set to VS.VSSTRESN where VS.VSTEST = "HEIGHT"  by visit.

WEIGHT

Weight (kg)

Num



Set to VS.VSSTRESN where VS.VSTEST = "WEIGHT"  by visit.

BSABody Surface Area (m2)Num



Compute from HEIGHT and WEIGHT at each visit, using the Du Bois method. BSA = 0.007184 × W0.425 × H0.725

There are multiple methods and the study protocol should describe which one to use (e.g., Mosteller, Haycock, Gehan & George, Boyd, Fujimoto, Takahira, and Schlich).

ACEINHFL

ACE Inhibitor Medications Flag

Char

Y; N

ADSL.ACEINHFL


PARAMParameterChar

Left Ventricular Ejection Fraction, Calculated (%);

Right Ventricular Ejection Fraction, Calculated (%);

N-Terminal ProB-type Natriuretic Peptide (pg/mL)

CV.CVTEST

LB.LBTEST


PARAMCDParameter CodeChar

LVEF_C;

RVEF_C;

BNPPRONT

CV.CVTESTCD

LB.LBTESTCD


PARAMNParameter (N)Num



Number PARAMCD as follows:

LVEF_C = "1"

RVEF_C = "2"

BNPPRONT = "3"

AVALAnalysis ValueNum


See Parameter Value Metadata

AVISITAnalysis VisitChar

Visit 1 (Baseline); 

Visit 6 (1 Year)


If CV.VISIT = "VISIT 1" then AVISIT = "Visit 1 (Baseline)".

If CV.VISIT = "VISIT 6" then AVISIT = "Visit 6 (1 Year)".

AVISITNAnalysis Visit (N)Num1; 6

CV.VISITNUM

LB.VISITNUM


VISITVisitNum

VISIT 1; VISIT 6

CV.VISIT

LB.VISIT


ADTAnalysis DateNumdate9.
Date portion of CV.CVDTC or LB.LBDTC converted to numeric and displayed in a format such as date9. 
ABLFLBaseline Record FlagCharY

If CV.VISIT = "VISIT 1" then ABLFL = "Y".

BASEBaseline ValueNum

Set BASE to AVAL from the record for that subject and parameter where ABLFL = "Y".

Populate BASE for additional visits by merging the value of BASE in the baseline record by USUBJID and PARAMCD.

CHGChange from BaselineNum

Compute CHG = AVAL - BASE for that record. Only compute for post-baseline records.
PCHGPercent Change from BaselineNum

Compute PCHG = (CHG / BASE) * 100. Only compute for post-baseline records.
CHGCAT1Change from Baseline Category 1Char

Decline >=5%; Decline <5%; Increase GT 100 pg/mL


See Parameter Value Metadata
SRCDOMSource DataChar

CV; LB


Set to the SDTM domain name that relates to the analysis value.
SRCVARSource VariableChar



Set to the SDTM variable that relates to the analysis value.
SRCSEQSource Sequence NumberNum


CV.CVSEQ

LB.LBSEQ

Set to the SDTM domain sequence number that relates to the analysis value.

...

Dataset wrap
Showtrue
Nameadcvntp
Rowcaps
Rows 1-2:Show the baseline ejection fraction measurements at VISIT 1.
Row 3:Shows the baseline N-Terminal ProB-type Natriuretic Peptide test results at VISIT 1.
Rows 4-5:Show the baseline ejection fraction measurements at VISIT 6.
Row 6:Shows the baseline N-Terminal ProB-type Natriuretic Peptide test results at VISIT 6.
Dataset2
tableidadcvntp
RowSTUDYIDUSUBJIDAGEAAGEAGEUSEXRACETRT01PTRT01AITTFLBSASCHEIGHTWEIGHTBSAACEINHFLPARAMPARAMCDPARAMNAVALAVISITAVISITNVISITADTABLFLBASECHGPCHGCHGCAT1SRCDOMSRCVARSRCSEQ
1DMD-EFLGEDMD-EF-01-10112.3YEARSMBLACK OR AFRICAN AMERICANDrug ADrug AY0.82119200.82YLeft Ventricular Ejection Fraction, Calculated (%)LVEF_C167Visit 1 (Baseline)1VISIT 116MAY2022Y67


CVCVTESTCD3
2DMD-EFLGEDMD-EF-01-10112.3YEARSMBLACK OR AFRICAN AMERICANDrug ADrug AY0.82119200.82YRight Ventricular Ejection Fraction, Calculated (%)RVEF_C274Visit 1 (Baseline))1VISIT 116MAY2022Y74


CVCVTESTCD7
3DMD-EFLGEDMD-EF-01-10112.3YEARSMBLACK OR AFRICAN AMERICANDrug ADrug AY0.82119200.82YN-Terminal ProB-type Natriuretic Peptide (IU/L)BNPPRONT340Visit 1 (Baseline)1VISIT 116MAY2022Y40


LBLBTESTCD1
4DMD-EFLGEDMD-EF-01-10112.3YEARSMBLACK OR AFRICAN AMERICANDrug ADrug AY0.82132321.08YLeft Ventricular Ejection Fraction, Calculated (%)LVEF_C160Visit 6 (1 Year)6VISIT 606APR2023
67-7-10.447761Decline >=5.0%CVCVTESTCD11
5DMD-EFLGEDMD-EF-01-10112.3YEARSMBLACK OR AFRICAN AMERICANDrug ADrug AY0.82132321.08YRight Ventricular Ejection Fraction, Calculated (%)RVEF_C261Visit 6 (1 Year)6VISIT 606APR2023
74-13-17.567568Decline >=5.0%CVCVTESTCD15
6DMD-EFLGEDMD-EF-01-10112.3YEARSMBLACK OR AFRICAN AMERICANDrug ADrug AY0.82132321.08YN-Terminal ProB-type Natriuretic Peptide (IU/L)BNPPRONT3900Visit 6 (1 Year)6VISIT 106APR2023
408602,150Increase GT 100 pg/mLLBLBTESTCD2

...

Definexmltable
DatasetADCVCMR
LevelVariable
PurposeAnalysis
NameVariable
Variable NameVariable LabelTypeCodelist/Controlled Terms/FormatSourceDerivation/Comment
STUDYIDStudy IdentifierChar

ADCVNTP.STUDYID


USUBJIDUnique Subject IdentifierChar

ADCVNTP.USUBJID


BRTHDTDate of BirthNumdate9.

ADCVNTP.BRTHDT


AGEAAGEAnalysis AgeNum

ADCVNTP.AGEAAGE


AGEUAge UnitCharYEARS

ADCVNTPL.AGEU


SEX

SexChar(SEX)

ADCVNTPL.SEX


RACE

RaceNum(RACE)

ADCVNTPL.RACE


TRTSDT

Date of First Exposure to Treatment

Numdate9.ADCVNTP.TRTSDT
TRT01P

Planned Treatment for Period 01

CharDrug A; Drug BADCVNTP.TRT01P

ITTFL

Intent-To-Treat Population Flag

Char

Y; N

ADCVNTP.ITTFL


BSASCBody Surface Area at ScreeningNum


ADCVNTP.BSASC


BSABody Surface Area (m2)Num


ADCVNTP.BSA


ACEINHFL

ACE Inhibitor Medications Flag

Char

Y; N

ADCVNTP.ACEINHFL


BNPPRONT


Num



BNPPRONT = AVAL where PARAMCD =  ADCVNTP.BNPPRONT, and merge by USUBJID and AVISITN.

Note: there are many ways to add this including transposing the data.

PARAMParameterChar

Left Ventricular Ejection Fraction, Calculated (%);

Right Ventricular Ejection Fraction, Calculated (%);

N-Terminal ProB-type Natriuretic Peptide (pg/mL)

ADCVNTP.PARAM


PARAMCDParameter CodeChar

LVEF_C;

RVEF_C;

BNPPRONT

ADCVNTP.PARAMCD


PARAMNParameter (N)Num


ADCVNTP.PARAMN


AVALAnalysis ValueNum

ADCVNTP.AVAL


AVISITAnalysis VisitChar

Visit 1 (Baseline);

Visit 6 (1 Year)

ADCVNTP.AVISIT


AVISITNAnalysis Visit (N)Num1; 6

ADCVNTP.AVISITN


ADTAnalysis DateNumdate9.ADCVNTP.ADT
ABLFLBaseline Record FlagCharYADCVNTP.ABLFL


BASEBaseline ValueNum
ADCVNTP.BASE


CHGChange from BaselineNum
ADCVNTP.CHG
PCHGPercent Change from BaselineNum
ADCVNTP.PCHG
CHGCAT1Change from Baseline Category 1Char

Decline >=5%; Decline <5%; Increase GT 100 pg/mL

ADCVNTP.CHGCAT1


...

Dataset wrap
Showtrue
Nameadcvcmr
Dataset2
tableidadcvcmr
RowSTUDYIDUSUBJIDBRTHDTTRT01PAAGEAGUSEXRACETRT01AITTFLBSAACEINHFLBNPPRONTPARAMPARAMCDPARAMNAVALAVISITAVISITNADTABLFLBASECHGPCHGCHGCAT1
1DMD-EFLGEDMD-EF-01-10107FEB2010Drug A12.3YEARSMBLACK OR AFRICAN AMERICANDrug AY0.82Y40Left Ventricular Ejection Fraction, Calculated (%)LVEF_C170Visit 1 (Baseline)116MAY2022Y70


2DMD-EFLGEDMD-EF-01-10107FEB2010Drug A12.3YEARSMBLACK OR AFRICAN AMERICANDrug AY0.82Y40Right Ventricular Ejection Fraction, Calculated (%)RVEF_C275Visit 1 (Baseline)116MAY2022Y75


3DMD-EFLGEDMD-EF-01-10107FEB2010Drug A12.3YEARSMBLACK OR AFRICAN AMERICANDrug AY1.08Y900Left Ventricular Ejection Fraction, Calculated (%)LVEF_C165Visit 6 (1 Year)606APR2023
70-5-10.447761Decline >=5.0%
4DMD-EFLGEDMD-EF-01-10107FEB2010Drug A12.3YEARSMBLACK OR AFRICAN AMERICANDrug AY1.08Y900Right Ventricular Ejection Fraction, Calculated (%)RVEF_C270Visit 6 (1 Year)606APR2023
75-5-17.567568Decline >=5.0%

...

Display

Table 14.xx.xx Change in Left Ventricular Ejection Fraction Percent Over 1 Year

Analysis ResultComparison of Change of Ejection Fraction Percent for the Treatment Groups (1 Year)
Analysis Variables(s)CHG
Analysis ReasonPrimary efficacy endpoint as prespecified in the SAP
Analysis PurposePrimary outcome measure

Data References

(incl. selection criteria)

PARAMCD = "LVEF_C"

Where ITTFL = "Y" and AVISITN = 6;

Documentation

Comparison of Means with 95% confidence interval

Programming Statements 

(Add programming language statements here: SAS, R, etc.)

Proc means DATA=ADCVNTP N MEAN clm STDERR;

/* Subset the data. Can run again selecting for paramcd="RVEF_C"*/DATA ONE;

SET ADCVCMR;

Where Where PARAMCD = 'LVEF_C' and ITTFL = "Y" and AVISITN = 6 and PARAMCD = 'LVEF_C';

RUN;

PROC MEANS DATA=ONE N MEAN clm STDERR;

;

Class CLASS TRT01P;

VAR Var CHG; 

RUNrun;


Table 2. This table demonstrates a model over multiple time points, adding some of the covariates that were retained in the analysis dataset. 

Display

Table 14.xx.xx Percent Change in Left Ventricular Ejection Fraction Percent Over Time (Yearly)

Analysis ResultComparison of Percent Change of Ejection Fraction for the Treatment Groups Over Time ( yearly)
Analysis Variables(s)CHG
Analysis ReasonPrimary efficacy endpoint as prespecified in the SAP
Analysis PurposePrimary outcome measure

Data References

(incl. selection criteria)

PARAMCD = "LVEF_C"

Where ITTFL = "Y"

Documentation

 The mixed model using lsmeans to compare treatment groups

Programming Statements 

(Add programming language statements here: SAS, R, etc.)

/* Note that CHG is only computed post-baseline, so subset for the yearly visits, i.e. 6, 12, 18 etc. */

Proc  mixed DATA TWO=ADCVNTP;

SET ADCVCMRClass  TRT01P AVISITN;

/* Subset by param, as there are two parameters with CHG calculated*/

Where ITTFL = "Y" and AVISITN IN(6,12,18,24,36,48)  and PARAMCD = "LVEF_C"; 

RUN;

PROC MIXED DATA=ADCVNTP;

CLASS STUYDID TRT01P AVISITN;

MODEL PCHGModel PCHG=AVISITN*TRT01P/Solution;

RANDOM INTERCEPT / SUBJECT=STUYDID TYPE=UN;

LSMEANS TRT01P*AVISITN/ CL PDIFF;

RUN;


Table 3. This This example uses the dataset ADCVNTP, selecting for the parameter "N-Terminal ProB-type Natriuretic Peptide (IU/L)"ADCVCMR, with BNPPRONT as an additional covariate.

Where

Display

Table 14.xx.xx Percent change in NTproBNP over 1 Year

Analysis ResultComparison of Percent Change of NTproBNP for the Treatment Groups Over a period of time.
Analysis Variables(s)PCHG
Analysis ReasonPrimary efficacy endpoint as prespecified in the SAP
Analysis PurposePrimary outcome measure

Data References

(incl. selection criteria)

PARAMCD =

"BNPPRONT"

L_VEFC;

ITTFL = "Y"

AND

and AVISIT GE 6;

Documentation

 The mixed model using lsmeans to compare treatment groups

Multiple Regression Model


Proc reg data=ADCVCMR ;

Where PARAMCD = L_VEFC and ITTFL = "Y" and AVISIT GE 6;

Model PCHG = AAGE SEX RACE BNPPRONT;

run

Programming Statements 

(Add programming language statements here: SAS, R, etc.)

/* NEEDS UPDATING*/

PROC MEANS DATA=ADCVCMR MEAN STD MEDIAN maxdec=3;

CLASS TRT01P;

BY VISIT;

VAR BNPPRONT;  

RUN

;

Pagenav2