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| Lines 1-1829: | Show the definition of the single 3 grouping factors referenced by the analysis. - Lines 2-19: Show the definition of the "Treatment" grouping factor, which has 3 groups: "Placebo", "Xanomeline Low Dose", and "Xanomeline High Dose". This grouping factor is not data-driven (dataDriven = false on line
3Show the definition of the 2 grouping factors referenced by the analysis, both of which are data-driven (dataDriven = true, as shown on lines 21 and 25). - Lines 20-2320-24: Show the definition of the "System Organ Class" grouping factor, for which group values are found in the ADAE AESOC variable specified in the groupingVariable attribute on line 23the groupingDataset and groupingVariable attributes on lines 22 and 23. This grouping factor is data-driven (dataDriven = true on line 24).
- Lines 2425-2729: Show the definition of the "Preferred Term" grouping factor, for which group values are found in the ADAE AEDECOD variable specified in the groupingVariable attribute on line 27the groupingDataset and groupingVariable attributes on lines 27 and 28. This grouping factor is data-driven (dataDriven = true on line 29).
| | Lines 2831-4044: | Show the definition of the method referenced by the analysis, "Summary by group of a categorical variable", which has 2 operations: - Lines 3234-3538: Show the definition of the "Count of subjects" operation.
- Lines 3639-4043: Show the definition of the "Percent of subjects" operation.
| | Lines 4246-5761: | Show the definition of the analysis: - Lines 4549-4650: Show that this is an analysis of the USUBJID variable in the ADSL dataset.
- Line 4751: Shows the reference to the "Summary by group of a categorical variable" method.
- Lines 4852-5761: Show the references to the 3 grouping factors, both of which are marked as producing a result for each group in the grouping factor (resultsByGroup = true, shown on lines 5054, 53 57 and 5660).
| | Lines 5862-178183 | Show a list of a subset of the results for the analysis. Each entry in the list (starting with the operationId attribute preceded by a hyphen) represents an instance of the OperationResult class and contains: - The identifier value of the statistical operation performed, which is in the operationId attribute.
- In the resultGroups attribute, a reference to both grouping factor groups associated with the result (indicated by the values of the groupingId attribute and:
- groupId for the "Treatment" grouping factor (which has predefined groups)
- groupValue for the other 2 data-driven groupings factors.
- The raw result value in the rawValue attribute, and
- In the formattedValue attribute, the result value formatted according to the pattern specified in the resultPattern attribute of the operation referenced by the operationId value. The specified patterns are shown on rows 35 38 and 3943.
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| Code Block |
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| title | YAML Example |
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| linenumbers | true |
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analysisGroupings:
- id: AnlsGrouping_01_Trt
dataDrivenname: falseTreatment
labelgroupingDataset: TreatmentADSL
groupingVariable: TRT01A
dataDriven: false
groups:
- id: AnlsGrouping_01_Trt_1
labelname: Placebo
order: 1
...
- id: AnlsGrouping_01_Trt_2
labelname: Xanomeline Low Dose
order: 2
...
- id: AnlsGrouping_01_Trt_3
labelname: Xanomeline High Dose
order: 3
...
dataGroupings:
- id: AnlsGrouping_06_Soc
dataDrivenname: System Organ trueClass
labelgroupingDataset: System Organ ClassADAE
groupingVariable: AESOC
groupingVariabledataDriven: AESOCtrue
- id: AnlsGrouping_07_Pt
dataDrivenname: Preferred trueTerm
labelgroupingDataset: Preferred TermADAE
groupingVariable: AEDECOD
dataDriven: true
methods:
- id: Mth01_CatVar_Summ_ByGrp
name: Summary by group of a categorical variable
operations:
- id: Mth01_CatVar_Summ_ByGrp_1_n
name: Count of subjects
label: n
order: 1
resultPattern: XXX
- id: Mth01_CatVar_Summ_ByGrp_2_pct
name: Percent of subjects
label: '%'
order: 2
resultPattern: ( XX.X)
...
analyses:
- id: An07_10_SocPt_Summ_ByTrt
name: Summary of Subjects with TEAEs by Treatment, System Organ Class and Preferred Term
version: 1
dataset: ADAE
variable: USUBJID
methodId: Mth01_CatVar_Summ_ByGrp
orderedGroupings:
- order: 1
resultsByGroup: true
groupingId: AnlsGrouping_01_Trt
- order: 2
resultsByGroup: true
groupingId: AnlsGrouping_06_Soc
- order: 3
resultsByGroup: true
groupingId: AnlsGrouping_07_Pt
results:
- operationId: Mth01_CatVar_Summ_ByGrp_1_n
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_1
- groupingId: AnlsGrouping_06_Soc
groupValue: CARDIAC DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: ATRIAL FIBRILLATION
rawValue: '1'
formattedValue: '1'
- operationId: Mth01_CatVar_Summ_ByGrp_2_pct
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_1
- groupingId: AnlsGrouping_06_Soc
groupValue: CARDIAC DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: ATRIAL FIBRILLATION
rawValue: '1.1628'
formattedValue: ( 1.2)
- operationId: Mth01_CatVar_Summ_ByGrp_1_n
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_1
- groupingId: AnlsGrouping_06_Soc
groupValue: GASTROINTESTINAL DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: DIARRHOEA
rawValue: '9'
formattedValue: '9'
- operationId: Mth01_CatVar_Summ_ByGrp_2_pct
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_1
- groupingId: AnlsGrouping_06_Soc
groupValue: GASTROINTESTINAL DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: DIARRHOEA
rawValue: '10.4651'
formattedValue: ( 10.5)
- operationId: Mth01_CatVar_Summ_ByGrp_1_n
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_2
- groupingId: AnlsGrouping_06_Soc
groupValue: CARDIAC DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: ATRIAL FIBRILLATION
rawValue: '1'
formattedValue: '1'
- operationId: Mth01_CatVar_Summ_ByGrp_2_pct
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_2
- groupingId: AnlsGrouping_06_Soc
groupValue: CARDIAC DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: ATRIAL FIBRILLATION
rawValue: '1.1905'
formattedValue: ( 1.2)
- operationId: Mth01_CatVar_Summ_ByGrp_1_n
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_2
- groupingId: AnlsGrouping_06_Soc
groupValue: GASTROINTESTINAL DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: DIARRHOEA
rawValue: '4'
formattedValue: '4'
- operationId: Mth01_CatVar_Summ_ByGrp_2_pct
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_2
- groupingId: AnlsGrouping_06_Soc
groupValue: GASTROINTESTINAL DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: DIARRHOEA
rawValue: '4.7619'
formattedValue: ( 4.8)
- operationId: Mth01_CatVar_Summ_ByGrp_1_n
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_3
- groupingId: AnlsGrouping_06_Soc
groupValue: CARDIAC DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: ATRIAL FIBRILLATION
rawValue: '3'
formattedValue: '3'
- operationId: Mth01_CatVar_Summ_ByGrp_2_pct
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_3
- groupingId: AnlsGrouping_06_Soc
groupValue: CARDIAC DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: ATRIAL FIBRILLATION
rawValue: '3.5714'
formattedValue: ( 3.6)
- operationId: Mth01_CatVar_Summ_ByGrp_1_n
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_3
- groupingId: AnlsGrouping_06_Soc
groupValue: GASTROINTESTINAL DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: DIARRHOEA
rawValue: '4'
formattedValue: '4'
- operationId: Mth01_CatVar_Summ_ByGrp_2_pct
resultGroups:
- groupingId: AnlsGrouping_01_Trt
groupId: AnlsGrouping_01_Trt_3
- groupingId: AnlsGrouping_06_Soc
groupValue: GASTROINTESTINAL DISORDERS
- groupingId: AnlsGrouping_07_Pt
groupValue: DIARRHOEA
rawValue: '4.7619'
formattedValue: ( 4.8)
...
... |
...
Alternatively, to aid readability, each of the identifier values could be used to retrieve and include the name or label (or any other descriptive information) from the definitions of the operations, grouping factors, and predefined groups:
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| analysisId | operationId | operation_label | groupingId1 | grouping_label1name1 | groupId1 | group_label1name1 | groupingId2 | grouping_label2name2 | groupValue2 | groupingId3 | grouping_label3name3 | groupValue3 | rawValue | formattedValue |
|---|
| An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_1_n | n | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_1 | Placebo | AnlsGrouping_06_Soc | System Organ Class | CARDIAC DISORDERS | AnlsGrouping_07_Pt | Preferred Term | ATRIAL FIBRILLATION | 1 | 1 | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_2_pct | % | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_1 | Placebo | AnlsGrouping_06_Soc | System Organ Class | CARDIAC DISORDERS | AnlsGrouping_07_Pt | Preferred Term | ATRIAL FIBRILLATION | 1.1628 | ( 1.2) | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_1_n | n | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_1 | Placebo | AnlsGrouping_06_Soc | System Organ Class | GASTROINTESTINAL DISORDERS | AnlsGrouping_07_Pt | Preferred Term | DIARRHOEA | 9 | 9 | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_2_pct | % | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_1 | Placebo | AnlsGrouping_06_Soc | System Organ Class | GASTROINTESTINAL DISORDERS | AnlsGrouping_07_Pt | Preferred Term | DIARRHOEA | 10.4651 | ( 10.5) | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_1_n | n | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_2 | Xanomeline Low Dose | AnlsGrouping_06_Soc | System Organ Class | CARDIAC DISORDERS | AnlsGrouping_07_Pt | Preferred Term | ATRIAL FIBRILLATION | 1 | 1 | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_2_pct | % | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_2 | Xanomeline Low Dose | AnlsGrouping_06_Soc | System Organ Class | CARDIAC DISORDERS | AnlsGrouping_07_Pt | Preferred Term | ATRIAL FIBRILLATION | 1.1905 | ( 1.2) | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_1_n | n | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_2 | Xanomeline Low Dose | AnlsGrouping_06_Soc | System Organ Class | GASTROINTESTINAL DISORDERS | AnlsGrouping_07_Pt | Preferred Term | DIARRHOEA | 4 | 4 | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_2_pct | % | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_2 | Xanomeline Low Dose | AnlsGrouping_06_Soc | System Organ Class | GASTROINTESTINAL DISORDERS | AnlsGrouping_07_Pt | Preferred Term | DIARRHOEA | 4.7619 | ( 4.8) | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_1_n | n | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_3 | Xanomeline High Dose | AnlsGrouping_06_Soc | System Organ Class | CARDIAC DISORDERS | AnlsGrouping_07_Pt | Preferred Term | ATRIAL FIBRILLATION | 3 | 3 | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_2_pct | % | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_3 | Xanomeline High Dose | AnlsGrouping_06_Soc | System Organ Class | CARDIAC DISORDERS | AnlsGrouping_07_Pt | Preferred Term | ATRIAL FIBRILLATION | 3.5714 | ( 3.6) | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_1_n | n | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_3 | Xanomeline High Dose | AnlsGrouping_06_Soc | System Organ Class | GASTROINTESTINAL DISORDERS | AnlsGrouping_07_Pt | Preferred Term | DIARRHOEA | 4 | 4 | | An07_10_SocPt_Summ_ByTrt | Mth01_CatVar_Summ_ByGrp_2_pct | % | AnlsGrouping_01_Trt | Treatment | AnlsGrouping_01_Trt_3 | Xanomeline High Dose | AnlsGrouping_06_Soc | System Organ Class | GASTROINTESTINAL DISORDERS | AnlsGrouping_07_Pt | Preferred Term | DIARRHOEA | 4.7619 | ( 4.8) |
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