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Comment: Part 1 of Revisions needed for: PARMCD values changed in TS and TX datasets per TOBA-748

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Dataset wrap
Rowcaps
Rows 1-2:Show 2 records for TSPARMCD = "GLPTYP", using TSSEQ to indicate multiple records, since both GLP types apply for this example study. 
Row 8:

Shows that the applicant's

Jira
showSummaryfalse
serverIssue Tracker (JIRA)
serverId85506ce4-3cb3-3d91-85ee-f633aaaf4a45
keyTOBA-356
study reference ID is not applicable.

Rows 9-12:Show that TSGRPID has been used to link records (name, location, country) related to the test facility (TSGRPID = 1). The study director is associated with the test facility.
Rows 14-16:

Show that TSGRPID (TSGRPID=4) has been used to link the information on the testing guideline followed on this study (TSTGDNAM, TSTGDORG, TSTGDVER).  

Jira
showSummaryfalse
serverIssue Tracker (JIRA)
serverId85506ce4-3cb3-3d91-85ee-f633aaaf4a45
keyTOBA-56

Dataset2

Row

STUDYID

GNTXAID

DOMAIN

TSSEQ

TSGRPID

TSPARMCD

TSPARM

TSVAL

TSVALNF

1123NRUTS1
GLPTYPGood Laboratory Practice TypeFDA
2123NRUTS2
GLPTYPGood Laboratory Practice TypeOECD
3123NRUTS1
STSTDTCStudy Start Date2022-05-25
4123NRUTS1
STITLEStudy Title

Determination of the in vitro genotoxicity potential using the in vitro Neutral Red Uptake assay


5123NRUTS1
SNDIGVERSEND Implementation Guide VersionTOBACCO IMPLEMENTATION GUIDE VERSION 1.0
6123NRUTS1
SNDCTVERSEND Controlled Terminology VersionSEND Terminology 2021-09-30
7123NRUTS1
SAPPLCNTAPPLCNTApplicant OrganizationExample Applicant Inc.
8123NRUTS1
SPREFIDAPREFIDApplicant Study Reference ID
NOT APPLICABLE
9123NRUTS11TSTFNAMTest Facility NameExample Test Lab Name
10123NRUTS11TSTFLOCTest Facility Location10 Somewhere Street, Montgomery, AL 10000
11123NRUTS11TFCNTRYTest Facility CountryUSA
12123NRUTS11STDIRStudy DirectorDr. R. Smith
13123NRUTS1
GLPFLGLP FlagY
14123NRUTS14TSTGDNAMTesting Guideline NamePublication No. 07-4519
15123NRUTS14TSTGDORGTesting Guideline OrganizationNIH
16123NRUTS14TSTGDVERTesting Guideline Version2006-11
17123NRUTS1
SSTYPStudy TypeGENOTOXICITY IN VITRO
18123NRUTS1
SSSTYPStudy Sub TypeIn Vitro Neutral Red Uptake
19123NRUTS1
SPECIESSpeciesHuman
20123NRUTS1
CELLLNCell LineNHK
Dataset wrap

Jira
showSummaryfalse
serverIssue Tracker (JIRA)
serverId85506ce4-3cb3-3d91-85ee-f633aaaf4a45
keyTOBA-279

Rowcaps
Rows 1-12:Show the test conditions for the set with a short name or SETCD value of ALL. The applicant chose this value to represent test conditions for the entire assay. 
Rows 13-20:Show the test conditions for the set with a short name or SETCD value of CSC-50b. The applicant chose this value to represent plate number 1, well number 1, with a concentration of 50µg/mLof cigarette smoke condensate as shown in the report table for study 123.
Row 20:Shows the value for Cell Line (CELLLN) is not applicable because the well is a media-only well, having no NHK cells. 

Rows 21-28:

Show the test conditions for the set with a short name or SETCD value of CSC-50. The applicant chose this value to represent plate number 1, well number 2, with a concentration of 50µg/mLof cigarette smoke condensate as shown in the report table for study 123.
Rows 29-36:Show the test conditions for the set with a short name or SETCD value of SLS-110. The applicant chose this value to represent both wells numbered 7 in plate number 1 and 2, with a concentration of 110µg/mLof sodium laurel sulfate as shown in the report table for study 123.
Dataset2
RowSTUDYIDGNTXAIDDOMAINSETCDSETTXSEQTXPARMCDTXPARMTXVAL
1123NRUTXALLALL_ASSAY1TRTDMINIVTDMINIn vitro Treatment Duration Minimum47.5
2123NRUTXALLALL_ASSAY

2

TRTDTRGIVTDTRGIn vitro Treatment Duration Target48
3123NRUTXALLALL_ASSAY3TRTDMAXIVTDMAXIn vitro Treatment Duration Maximum48.5
4123NRUTXALLALL_ASSAY4TRTDUIVTDUIn vitro Treatment Duration UnitHOURS
5123NRUTXALLALL_ASSAY5INCBTMPIncubation Temperature37
6123NRUTXALLALL_ASSAY6INCBTMPUIncubation Temperature UnitC
7123NRUTXALLALL_ASSAY7WAVELGTHSWAVENMSpectrophotometer wavelength in nanometersWavelength540
8123NRUTXALLALL_ASSAY8HUMIDATMRHPAtmospheric Relative Humidity Percent90
9123NRUTXALLALL_ASSAY9ATMCO2ATMCO2PAtmospheric CO2 Percent5
10123NRUTXALLALL_ASSAY10SPDEVIDapplicant defined device identifierPUFFMASTER3k
11123NRUTXALLALL_ASSAY11DUREFIDSMKRGMSmoking RegimeRegimenMedium Intensity Regimen
12123NRUTXALLALL_ASSAY12SPTOBID

Applicant-defined tobacco identifier

CIG01a
13123NRUTXCSC-50bCSC-50-blank13PSETCD

Parent Set Code

ALL
14123NRUTXCSC-50bCSC-50-blank14EXPTYP

Exposure Type

Air Liquid Interface
15123NRUTXCSC-50bCSC-50-blank15SAMTYPSample TypeWhole Smoke Conditioned Media
16123NRUTXCSC-50bCSC-50-blank16INTRVNName of the Intervention ArticleTobacco ProdA
17123NRUTXCSC-50bCSC-50-blank17ITVTYPEType of intervention articlePRODUCT
18123NRUTXCSC-50bCSC-50-blank18ITVCONC

Concentration of intervention article

50
19123NRUTXCSC-50bCSC-50-blank19ITVCONCU

Concentration Unit

ug/ml
20123NRUTXCSC-50bCSC-50-blank20CELLLNCell LineNOT APPLICABLE
21123NRUTXCSC-50CSC-5021PSETCD

Parent Set Code

ALL
22123NRUTXCSC-50CSC-5022EXPTYP

Exposure Type

Air Liquid Interface
23123NRUTXCSC-50CSC-5023SAMTYPSample TypeWhole Smoke Conditioned Media
24123NRUTXCSC-50CSC-5024INTRVNName of the Intervention ArticleTobacco ProdA
25123NRUTXCSC-50CSC-5025ITVTYPEType of intervention articlePRODUCT
26123NRUTXCSC-50CSC-5026ITVCONC

Concentration of intervention article

50
27123NRUTXCSC-50CSC-5027ITVCONCUConcentration Unitug/ml
28123NRUTXCSC-50CSC-5028CELLLNCell LineNHK
29123NRUTXSLS-110SLS-11029PSETCD

Parent Set Code

ALL
30123NRUTXSLS-110SLS-11030EXPTYP

Exposure Type

Air Liquid Interface
31123NRUTXSLS-110SLS-11031SAMTYPSample TypeLiquid
32123NRUTXSLS-110SLS-11032INTRVNName of the Intervention ArticleSodium Laurel Sulfate
33123NRUTXSLS-110SLS-11033ITVTYPEType of intervention articlePOSITIVE CONTROL
34123NRUTXSLS-110SLS-11034ITVCONC

Concentration of intervention article

110
35123NRUTXSLS-110SLS-11035ITVCONCUConcentration Unitug/ml
36123NRUTXSLS-110SLS-11036CELLLNCell LineNHK

...