The BE example below show
| Dataset wrap |
|---|
|
| Rowcaps |
|---|
Row 1: | Shows the collection of the blood sample. |
|---|
Row 2: | Shows the extraction of the plasma via centrifuge. BESPDEVID holds the identifier for the container into which the plasma is placed. (Not shown: any preservatives with which the container comes pretreated, which would be stored in the Device Properties (DO) domain.) |
|---|
Row 3: | Shows the transportation of the plasma from the site to the lab. |
|---|
Row 4: | Shows the extraction of the RNA, which includes purification and quality control testing to make sure the sample is of a high enough quality to be viable. BESPDEVID holds the identifier for the purification kit. |
|---|
Rows 5-7: | Show the aliquoting of the RNA. |
|---|
Row 8: | Shows the sequencing of the first RNA aliquot. (Not shown: results from sequencing, which would be stored in the Pharmacogenomics Findings (PF) domain.) |
|---|
Rows 9-10: | Show the freezing of the second and third RNA aliquots. |
|---|
|
| Dataset2 |
|---|
Row | STUDYID | DOMAIN | USUBJID | SPDEVID | BESEQ | BEREFID | BETERM | BEDECOD | BEPARTY | BEPRTYID | BECAT | VISITNUM | BEDTC | BESTDTC | BEENDTC |
|---|
1 | 3441271 | BE | MU-298 |
| 1 | 298B1 | Collecting | COLLECTING | SITE | 05 | COLLECTION | 2 | 2010-04-01T11:50 | 2010-04-01T11:50 |
|
|---|
2 | 3441271 | BE | MU-298 | 293USHE8 | 2 | 298B1-1 | Extracting | EXTRACTING | SITE | 05 | EXTRACTION | 2 | 2010-04-01T11:50 | 2010-04-01T12:10 |
|
|---|
|
|
The specimen type is given in a supplemental qualifier that mimics the standard findings variable --SPEC, and draws from the 2 codelists (GENSMP and SPECTYPE) for its values, depending on whether or not the biospecimen is a sample of the subject's genetic material.
| Dataset wrap |
|---|
|
| Rowcaps |
|---|
| Rows 1-2: | Give the specimen types for the first 2 specimens as blood and plasma, respectively. These values come from the SPECTYPE codelist. |
|
| Dataset2 |
|---|
| Row | STUDYID | RDOMAIN | USUBJID | IDVAR | IDVARVAL | QNAM | QLABEL | QVAL | QORIG | QEVAL |
|---|
| 1 | 3441271 | BE | MU-298 | BEREFID | 298B1 | BESPEC | Specimen Type | BLOOD | CRF |
| | 2 | 3441271 | BE | MU-298 | BEREFID | 298B1-1 | BESPEC | Specimen Type | PLASMA | CRF |
|
|
|
The IS example shows the measured changes in the interferon gamma levels in the subject's plasma sample.
| Dataset wrap |
|---|
| Dataset2 |
|---|
| hi1style | yellow |
|---|
| hi1 | column ISBDAGNT |
|---|
| tableid | IS table 1 |
|---|
| Row | STUDYID | DOMAIN | USUBJID | SPDEVID | ISSEQ | ISGRPID | ISLNKID | ISTESTCD | ISTEST | ISTSTCND | ISCNDAGT | ISTSTDTL | ISORRES | ISORRESU | ISSTRESC | ISSTRESN | ISSTRESU | ISSPEC | ISMETHOD | ISDTC |
|---|
1 | ABC | IS | ABC-01-203 | ABC001 | 1 | 1 | B | IFNG | Interferon Gamma | WITHOUT STIMULATING AGENT |
|
| 0.9 | IU/mL | 0.9 | 0.9 | IU/mL | PLASMA | ELISA | 2013-08-26 | 2 | ABC | IS | ABC-01-203 | ABC001 | 2 | 1 | B | IFNG | Interferon Gamma | WITH STIMULATING AGENT | TB1 Antigen |
| 6.2 | IU/mL | 6.2 | 6.2 | IU/mL | PLASMA | ELISA | 2013-08-26 | 3 | ABC | IS | ABC-01-203 | ABC001 | 2 | 1 | B | IFNG | Interferon Gamma | WITH STIMULATING AGENT | TB2 Antigen |
| 9.8 | IU/mL | 9.8 | 9.8 | IU/mL | PLASMA | ELISA | 2013-08-26 | | 4 | ABC | IS | ABC-01-203 | ABC001 | 3 | 1 | B | IFNG | Interferon Gamma | WITH STIMULATING AGENT | Mitogen |
| 5 | IU/mL | 5 | 5 | IU/mL | PLASMA | ELISA | 2013-08-26 | | 5 | ABC | IS | ABC-01-203 | ABC001 | 4 | 1 | B | IFNG | Interferon Gamma |
|
| INTERPRETATION | POSITIVE |
| POSITIVE |
|
|
| ELISA | 2013-08-26 |
|
|