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This is an example showing the report table, trial design, and results from the in vitro bacterial reverse mutation test of an example study, Study #8325064. This bacterial reverse mutation test uses four different amino acid-requiring strains of Salmonella typhimurium (S. typhimurium) and one strain of Escherichia coli (E. coli) to detect point mutations, which involve substitution, addition or deletion of one or a few DNA base pairs. 

A simplified image of the test procedure is shown above.

In this example, the Trial Summary dataset, ts.xpt, includes many informational fields that may provide context at the study level, for Study 8325064.  Also, TSGRPID has been used to link records (name, location, country) related to the test facility (TSGRPID = 1) and records related to the Test Site (TSGRPID = 2). The Study Director is associated with the Test Facility and the Principal Investigator is associated with the Test Site. Finally, the Primary Treatment CAS Registry Number is not known and this is recorded as an empty TSVAL and UNKNOWN in the corresponding TSVALNF.

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Dataset wrap
Nametx.xpt Trial Sets
Rowcaps
Rows 1-22:Show trial set parameters and trial set values that comprise the test conditions for the set SetA. SetA is the data for the vehicle control (i.e., Strain of TA98, vehicle control with concentration value of 0). SetA is associated with the first row, labeled "SetA", in the report table for example study 8325064.
Rows 23-44:Show trial set parameters and trial set values that comprise the test conditions for the set SetR. SetR is the data for the vehicle control (i.e., Strain of TA100, positive control with a concentration value of 2). SetR is associated with the eighteenth row, labeled "SetR", in the report table for example study 8325064.
Dataset2
SAMTYP 
RowSTUDYIDASSAYIDDOMAINSETCDSETTXSEQTXPARMCDTXPARMTXVAL
18325064AmesTX

SetA

A-TA98-C01SPECIESSpeciesSalmonella typhimurium
28325064AmesTXSetAA-TA98-C02STRAINStrain/SubstrainTA98
38325064AmesTX

SetA 

A-TA98-C03METACTMetabolic Activation  
48325064AmesTX

SetA 

A-TA98-C04METACTFLY/N presence of metabolic activationN
58325064AmesTXSetAA-TA98-C05TRTDMINTreatment Duration Minimum71.5
68325064AmesTXSetAA-TA98-C06TRTDTRGTreatment Duration Target72
78325064AmesTXSetAA-TA98-C07TRTDMAXTreatment Duration Maximum72.5
88325064AmesTXSetAA-TA98-C08TRTDUTreatment Duration UnitHOURS
98325064AmesTXSetAA-TA98-C09INCBTMPIncubation Temperature37
108325064AmesTXSetAA-TA98-C010INCBTMPUIncubation Temperature UnitC
118325064AmesTXSetAA-TA98-C011HUMIDAtmospheric Relative Humidity  Percent50
128325064AmesTXSetAA-TA98-C012ATMCO2Atmospheric CO2 Percent5
138325064AmesTXSetAA-TA98-C013SPTOBID

Sponsor defined tobacco identifier

CIG01a
148325064AmesTXSetAA-TA98-C014EXPTYP

Exposure Type (See TIG NC workstream minutes 30-Jan here: Nonclinical)

Submerged
158325064AmesTXSetAA-TA98-C015SAMTYP

Sample Type

Total Particulate Matter in PBS
168325064AmesTXSetAA-TA98-C016INTRVN

name of the intervention article

TA1
178325064AmesTXSetAA-TA98-C017ITVTYPE

type of intervention article

Vehicle Control
188325064AmesTXSetAA-TA98-C018ITVCONCConcentration of intervention article0
198325064AmesTXSetAA-TA98-C019ITVCONCUConcentration Unitug/plate
208325064AmesTXSetAA-TA98-C020TRTVTreatment VehicleDMSO
218325064AmesTXSetAA-TA98-C021SPDEVIDSponsor defined device identifierPUFFMASTER3K
228325064AmesTXSetAA-TA98-C022DUREFIDSmoke RegimenMedium Intensity Regimen
238325064AmesTX

SetR

R-TA100-C21SPECIESSpeciesSalmonella typhimurium
248325064AmesTX

SetR

R-TA100-C22STRAINStrain/SubstrainTA100
258325064AmesTX

SetR

R-TA100-C23METACTMetabolic Activation  
268325064AmesTX

SetR

R-TA100-C24METACTFLY/N presence of metabolic activationN
278325064AmesTX

SetR

R-TA100-C25TRTDMINTreatment Duration Minimum71.5
288325064AmesTX

SetR

R-TA100-C26TRTDTRGTreatment Duration Target72
298325064AmesTX

SetR

R-TA100-C27TRTDMAXTreatment Duration Maximum72.5
308325064AmesTX

SetR

R-TA100-C28TRTDUTreatment Duration UnitHOURS
318325064AmesTX

SetR

R-TA100-C29INCBTMPIncubation Temperature37
328325064AmesTX

SetR

R-TA100-C210INCBTMPUIncubation Temperature UnitC
338325064AmesTX

SetR

R-TA100-C211HUMIDAtmospheric Relative Humidity  Percent50
348325064AmesTX

SetR

R-TA100-C212ATMCO2Atmospheric CO2 Percent5
358325064AmesTX

SetR

R-TA100-C213SPTOBID

Sponsor defined tobacco identifier

CIG01a
368325064AmesTX

SetR

R-TA100-C214EXPTYP

Exposure Type 

Submerged
378325064AmesTX

SetR

R-TA100-C215SAMTYP 

Sample Type

Total Particulate Matter in PBS
388325064AmesTX

SetR

R-TA100-C216INTRVN

name of the intervention article

TA1
398325064AmesTX

SetR

R-TA100-C217ITVTYPE

type of intervention article

Positive Control
408325064AmesTX

SetR

R-TA100-C218ITVCONCConcentration of intervention article2
418325064AmesTX

SetR

R-TA100-C219ITVCONCUConcentration Unitug/plate
428325064AmesTX

SetR

R-TA100-C220TRTVTreatment VehicleDMSO
438325064AmesTX

SetR

R-TA100-C221SPDEVIDSponsor defined device identifierPUFFMASTER3K
448325064AmesTX

SetR

R-TA100-C222DUREFIDSmoke RegimenMedium Intensity Regimen


Observational Unit Identifiers (OBUIDs) are defined by the sponsor to uniquely identify the observational unit within an experimental unit. In this example the sponsor chose to define the EUIDs based on trial sets (e.g., F) and OBUIDs based on the position of the tube in one of multiple exposure/incubation plates (e.g, 6_1 for plate 6, position 1).

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