Page History

How do we handle "toxic, no revertant colonies"? (LAK will add 6 records with GTSTAT = NOT DONE, GTREASND = "TOO MUCH CYTOTOXICITY,"
When "-" in Mean, Std Dev, Fold Inc - refer to SEND team's marked-up table (GTSTAT = NOT DONE; variety of REASND)

populate units of COLONIES
recreate the data table - clean up, add "S" to the first set A
move assumptions out of all of the examples
add row captions to highlight exceptions/assumptions

...

Dataset wrap

Name	gt.xpt

Rowcaps

Rows 1-7:	Show values collected for the set, SetA.
Rows 8-16:	Shows values collected for the set, SetF.
Rows
Rows 6-7:	Show a suggested use of the LBSCAT variable. It could be used to further classify types of tests within a laboratory panel (e.g., "DIFFERENTIAL").
Rows 6,7,14,15,16 x,x,x,x:	Show values collected (e.g., MEAN, STANDARD DEVIATION, and/or FOLD INCREASE) that apply to all of the observational units within the experimental unit, as shown by OBUID = "ALL".

Dataset2

Row	STUDYID	ASSAYID	DOMAIN	TXSETCD	EUID	OUID	GTSEQ	GTTESTCD	GTTEST	GTORRES	GTORRESU	GTCOLSRT (coll. summ. result type)	GTSTRESC	GTSTRESN	GTSTRESU	GTDTC	GTMETHOD
1	8325064	Ames	GT	SETA	A	0_1	1	RPP	Revertant Numbers Per Plate	26	COLONIES		26	26	COLONIES	2015-08-03	INSTRUMENT COUNTED
2	8325064	Ames	GT	SETA	A	0_2	2	RPP	Revertant Numbers Per Plate	35	COLONIES		35	35	COLONIES	2015-08-03	INSTRUMENT COUNTED
3	8325064	Ames	GT	SETA	A	0_3	3	RPP	Revertant Numbers Per Plate	39	COLONIES		39	39	COLONIES	2015-08-03	INSTRUMENT COUNTED
4	8325064	Ames	GT	SETA	A	0_4	4	RPP	Revertant Numbers Per Plate	35	COLONIES		35	35	COLONIES	2015-08-03	INSTRUMENT COUNTED
5	8325064	Ames	GT	SETA	A	0_5	5	RPP	Revertant Numbers Per Plate	30	COLONIES		30	30	COLONIES	2015-08-03	INSTRUMENT COUNTED
6	8325064	Ames	GT	SETA	A	ALL	6	RPP	Revertant Numbers Per Plate	33.0	COLONIES	MEAN	33.0	33.0	COLONIES	2015-08-03
7	8325064	Ames	GT	SETA	A	ALL	7	RPP	Revertant Numbers Per Plate	5.0	COLONIES	STANDARD DEVIATION	5.0	5.0	COLONIES	2015-08-03
8	8325064	Ames	GT	SETF	F	6_1	1	RPP	Revertant Numbers Per Plate	8	COLONIES		8	8	COLONIES	2015-08-03	MANUALLY COUNTED
9	8325064	Ames	GT	SETF	F	6_1	2	CYTOTOX	Cytotoxicity	Very thin background bacterial lawn			V			2015-08-03
10	8325064	Ames	GT	SETF	F	6_2	3	RPP	Revertant Numbers Per Plate	10	COLONIES		10	10	COLONIES	2015-08-03	MANUALLY COUNTED
11	8325064	Ames	GT	SETF	F	6_2	2	CYTOTOX	Cytotoxicity	Very thin background bacterial lawn			V			2015-08-03
12	8325064	Ames	GT	SETF	F	6_3	4	RPP	Revertant Numbers Per Plate	12	COLONIES		12	12	COLONIES	2015-08-03	MANUALLY COUNTED
13	8325064	Ames	GT	SETF	F	6_3	2	CYTOTOX	Cytotoxicity	Very thin background bacterial lawn			V			2015-08-03
14	8325064	Ames	GT	SETF	F	ALL	5	RPPMEAN	Mean of Revertant Numbers Per Plate	10.0	COLONIES	MEAN	10.0	10.0	COLONIES	2015-08-03
15	8325064	Ames	GT	SETF	F	ALL	6	RPPSTDDV	Standard Deviation of Revertant Numbers Per Plate	2.0	COLONIES	STANDARD DEVIATION	2.0	2.0	COLONIES	2015-08-03
16	8325064	Ames	GT	SETF	F	ALL	7	RPPFDINC	Fold Increase of Revertant Numbers Per Plate	0.3	COLONIES	FOLD INCREASE	0.3	0.3	COLONIES	2015-08-03
17	8325064	Ames	GT	SETG	G	5_1	1	CYTOTOX	Cytotoxicity	Toxic No Revertant Colonies			T			2015-08-03
18	8325064	Ames	GT	SETG	G	5_2	2	CYTOTOX	Cytotoxicity	Toxic No Revertant Colonies			T			2015-08-03
19	8325064	Ames	GT	SETG	G	5_3	3	CYTOTOX	Cytotoxicity	Toxic No Revertant Colonies			T			2015-08-03
20	8325064	Ames	GT	SETR	R	18_1	1	RPP	Revertant Numbers Per Plate	812	COLONIES		812	812	COLONIES	2015-08-03	INSTRUMENT COUNTED
21	8325064	Ames	GT	SETR	R	18_2	2	RPP	Revertant Numbers Per Plate	912	COLONIES		912	912	COLONIES	2015-08-03	INSTRUMENT COUNTED
22	8325064	Ames	GT	SETR	R	18_3	3	RPP	Revertant Numbers Per Plate	839	COLONIES		839	839	COLONIES	2015-08-03	INSTRUMENT COUNTED
23	8325064	Ames	GT	SETR	R	ALL	4	RPPMEAN	Mean of Revertant Numbers Per Plate	854.3	COLONIES	MEAN	854.3	854.3	COLONIES	2015-08-03
24	8325064	Ames	GT	SETR	R	ALL	5	RPPSTDDV	Standard Deviation of Revertant Numbers Per Plate	51.7	COLONIES	STANDARD DEVIATION	51.7	51.7	COLONIES	2015-08-03
25	8325064	Ames	GT	SETR	R	ALL	6	RPPFLDINC	Fold Increase of Revertant Numbers Per Plate	6.4	COLONIES	FOLD INCREASE	6.4	6.4	COLONIES	2015-08-03

Page tree

Versions Compared

Old Version 34

New Version 35

Key