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title	ts.xpt (trial summary, study level parameters)

Assumption: The intent of this dataset is to provide a summary of trial (study) information. This is not subject-level data.
Assumption: A Trial (study) can have more than one assay type
Assumption: ASSAYID value of ALL indicates that it applies to all assays in the study
Assumption: SPDEVID and DUREFID should only be in TX (with the same value for all sets if there is only one device used)
Assumption: SPDEVID (sponsor defined device identifier) should be added at the trial set level (tx.xpt) - we can discuss if this should be in TS when there is only one device for a study
- This allows for studies where there are multiple products and different product(s) per trial set, one record for each product that is being tested in each particular trial set (tx.xpt)
Do we need to document anything about extraction process steps from the smoking machine to a test material for an assay (MNvit) (ie, rinsing a filter??)

Row	STUDYID	ASSAYID	DOMAIN	TSSEQ	TSGRPID	TSPARMCD	TSPARM	TSVAL	TSVALNF
1	123	MNvit	TS	1		GLPTYP	Good Laboratory Practice Type	FDA
2	123	MNvit	TS	2		GLPTYP	Good Laboratory Practice Type	OECD
3	123	MNvit	TS	1		STSTDTC	Study Start Date	2022-05-25
4	123	MNvit	TS	1		STITLE	Study Title	Determination of the in vitro genotoxicity potential of 10 tobacco products in the in vitro Micronucleus Assay
5	123	MNvit	TS	1		SNDIGVER	SEND Implementation Guide Version	TOBACCO IMPLEMENTATION GUIDE VERSION 1.0
6	123	MNvit	TS	1		SNDCTVER	SEND Controlled Terminology Version	SEND Terminology 2021-09-30
7	123	MNvit	TS	1		SSPONSOR	Sponsor Organization	Example Sponsor Inc.
8	123	MNvit	TS	1		SPREFID	Sponsor's Study Reference ID		NOT APPLICABLE
9	123	MNvit	TS	1	1	TSTFNAM	Test Facility Name	Example Tox Lab Name
10	123	MNvit	TS	1	1	TSTFLOC	Test Facility Location	10 Somewhere Street, Montgomery, AL 10000
11	123	MNvit	TS	1	1	TFCNTRY	Test Facility Country	USA
12	123	MNvit	TS	1	1	STDIR	Study Director	Dr. R. Smith
13	123	MNvit	TS	1		GLPFL	GLP Flag	Y
14	123	MNvit	TS	1		ASTD	Assay Standard	OECD Test No. 487
15	123	MNvit	TS	1		ASTDV	Assay Standard Version	2016-07-29
16	123	MNvit	TS	1		SSTYP	Study Type	GENOTOXICITY IN VITRO
17	123	MNvit	TS	1		SSSTYP	Study Sub Type	In Vitro Micronucleus
18	123	MNvit	TS	1		SPECIES	Species	Homo Sapiens
19	123	MNvit	TS	1		??	Test System?	TK6 Lymphoblastoid Suspension Cells

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title	to.xpt (tobacco identifiers, design paramters)

(This is a copy from the SDTM Example. Cigarette Design Parameters, will need to revise if this changes on the Product Description scription team)

Rows 1-4:	Show the records for the product identifiers for the tobacco product identified in SPTOBID. These records are categorized as product identifiers by TOCAT = PRODUCT IDENTIFIERS.
Rows 5-10:	Show the records for the product descriptors for the tobacco product identified in SPTOBID. These records are categorized as product identifiers by TOCAT = PRODUCT DESCRIPTOR.

to.xpt

Row	STUDYID	DOMAIN	SPTOBID	TOSEQ	TOTESTCD	TOTEST	TOCAT	TOORRES	TOORRESU	TOSTRESC	TOSTRESN	TOSTRESU
1	TOB07	TO	CIG01a	1	TBPRDCAT	Tobacco Product Category	PRODUCT IDENTIFIER	Cigarette		Cigarette
2	TOB07	TO	CIG01a	2	TBPRSCAT	Tobacco Product Subcategory	PRODUCT IDENTIFIER	Filtered, Combusted		Filtered, Combusted
3	TOB07	TO	CIG01a	3	MANUF	Manufacturer	PRODUCT IDENTIFIER	Joes Cigs USA		Joes Cigs USA
4	TOB07	TO	CIG01a	4	TRADENAM	Trade Name	PRODUCT IDENTIFIER	Treetop Menthol King Size		Treetop Menthol King Size
5	TOB07	TO	CIG01a	5	PACKTYP	Package Type	PRODUCT DESCRIPTOR	HARD PACK		HARD PACK
6	TOB07	TO	CIG01a	6	PRDQUAN	Product Quantity	PRODUCT DESCRIPTOR	20	CIGARETTE	20	20	CIGARETTE
7	TOB07	TO	CIG01a	7	LENGTH	Length	PRODUCT DESCRIPTOR	86.0	mm	86.0	86.0	mm
8	TOB07	TO	CIG01a	8	CIRCUMF	Circumference	PRODUCT DESCRIPTOR	26.0	mm	26.0	26.0	mm
9	TOB07	TO	CIG01a	9	VENTLTN	Ventilation	PRODUCT DESCRIPTOR	10.0	%	10.0	10.0	%
10	TOB07	TO	CIG01a	10	CHARFLAV	Characterizing Flavor	PRODUCT DESCRIPTOR	MENTHOL		MENTHOL

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title	tx.xpt (trial sets)

During CT definition/reviews will decide appropriate TXPARM and TXVAL; Treatment duration may be controlled; For now, we just include good example values based on our experience
Assumption: The Trial Sets (TX) domain provides the list of distinct sets of subjects having different experimental factors, treatment factors, inherent characteristics, or distinct sponsor designations as specified in the trial design.
Where is TK6 cell type? is this test system (see below)
- needs to be allowed to vary down to the well level / result level
Check Essential Data list

A1:

A2:

Extraction Process??

Row	STUDYID	ASSAYID	DOMAIN	SETCD	SET (what sponsor calls it, more meaningful label for Tables)	TXSEQ	TXPARMCD	TXPARM	TXVAL
	123	MNvit	TX	A1 (table 1, row 1, ST exposure with S9)	ST+S9C0	1	METACT	Metabolic Activation (this is the type of activation used)	+S9
	123	MNvit	TX	A1	ST+S9C0	2	METACTFL	Y/N presence of metabolic activation (this indicates that metabolic activation was used)	Y
						3	TDURMINTRTDMIN	Treatment Duration Min (ask Jon the terminology used)
						4	TRTDTRGTDURTRG	Treatment Duration Target
						5	TDURMAXTRTDMAX	Treatment Duration Max
						6	TRTDU	Treatment Duration Unit
						7	RCVDMINRECVMIN	Recovery Duration Min
						8	RECVTRGRCVDTRG	Recovery Duration Target
						9	RECVMAXRCVDMAX	Recovery Duration Max
						10	RECVURCVDU	Recovery Duration Unit
						11	INCBTMPINCBTEMP	Incubation Temperature
						12	INCBTMPU	Incubation Temperature Unit
						13	MEDIA	Composition of Media
						14	HUMID	Atmospheric Humidity
						15	ATMCO2	Atmospheric CO2
							SPTOBID	...	123	MNvit	TX	A1	ST+S9C0	3	TRTDRTRG	Treatment Duration target. (how do we show 3-6 hour range? start/end, target and tolerance?, one text field not-analyzable)	3	123	MNvit	TX	A1	ST+S9C0	4	TRTDRTOL	Treatment Duration Tolerance	123	MNvit	TX	A1	ST+S9C0	5	TRTDURU	Treatment Duration Unit (this is for both TRTDURT, TRTDURTOL)	H	SPTOBID	Sponsor defined tobacco identifier	CIG01a	EXTPRC??
							SMKEXSYS	Smoke Exposure System	Cambridge filter pad, eluted in DMSO
	123	MNvit	TX	A1	ST+S9C0	6	INTRVN	name of the intervention article can be: Tobacco ProdA, Bleomycin (positive control) or Cyclophosphamid A (positive control)	Tobacco ProdA
	123	MNvit	TX	A1	ST+S9C0	7	ITVTYPE	type of intervention article choices of values: product; negative control; positive control	ProductNegative Control
	123	MNvit	TX	A1	ST+S9C0	8	ITVCONC	Concentration of intervention article	0
	123	MNvit	TX	A1	ST+S9C0	9	ITVCONCU	Concentration Unit	ug/ml
	123	MNvit	TX	A1	ST+S9C0	10	SPDEVID	Sponsor defined device identifier	PUFFMASTER3K
	123	MNvit	TX	A1	ST+S9C0	11	DUREFID	Smoke Regimen	Medium Intensity Regimen
							SMKEXSYS	Smoke Exposure System	Cambridge filter pad, eluted in DMSO
	123	MNvit	TX	A2 (table 1, row 2, ST exposure with S9 at concentration 1250)	ST+S9-1250	1	METACT	Metabolic Activation (should there be two parms? Presence, type)?	+S9
	123	MNvit	TX	A2		2	METACTFL	Y/N presence of metabolic activation (this indicates that metabolic activation was used)	Y
	123	MNvit	TX	A2		3	TRTDRTRG	Treatment Duration target. (how do we show 3-6 hour range? start/end, target and tolerance?, one text field not-analyzable)	3
	123	MNvit	TX	A2		4	TRTDRTOL	Treatment Duration Tolerance
	123	MNvit	TX	A2		5	TRTDURU	Treatment Duration Unit (this is for both TRTDURT, TRTDURTOL)	H
	123	MNvit	TX	A2		6	INTRVN	name of the intervention article	Tobacco ProdA
	123	MNvit	TX	A2		7	ITVTYPE	type of intervention article	Product
	123	MNvit	TX	A2		8	ITVCONC	Concentration of i a	1250
	123	MNvit	TX	A2		9	ITVCONCU	Concentration Unit	ug/ml
	123	MNvit	TX	A2		10	SPDEVID	Sponsor defined device identifier	PUFFMASTER2023
	123	MNvit	TX	A2		11	DUREFID	Smoke Regimen	High Intensity Regimen
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Key

SET (what sponsor calls it, more meaningful label for Tables)