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titleStudy 123, Report (for reference only, will be deleted?)

For the purposes of team review of the example data, the report is  included in this section: 

Sample data #1: Determination of the in vitro genotoxicity potential of 10 tobacco products in the in vitro Micronucleus Assay

Study info: This study was performed to assess the in vitro genotoxicity of 10 different tobacco products containing 1% to 2% nicotine. The genotoxic potential was determined using the in vitro micronucleus test with TK6 lymphoblastoid suspension cells. The study was conducted in compliance with the following documents:

  • OECD TG 487 (2010): Guideline for the testing of chemicals: In vitro mammalian cell micronucleus test.
  • BL SOP 132: Determination of the in vitro genotoxicity of condensates from tobacco products and ingredients for tobacco products / electronic vapour products – in vitro micronucleus test (IVM) with TK6 cells.

The cells were exposed to increasing dose levels of tobacco product using short term treatment in the presence and absence of an external metabolic activation system (ST+/-S9 mix) as well as a long term treatment in the absence of an external metabolic activation system (LT-S9 mix).

Toxicity was calculated as relative increase in cell count (RICC), relative cell count (RCC) and relative population doubling (RPD). RPD is the cytotoxicity measure used for the assessment. RICC and RCC are also reported but not considered for the assessment.

Note: OECD GUIDELINE FOR THE TESTING OF CHEMICALS

Population Doubling = [log (Post-treatment cell number ÷ Initial cell number)] ÷ log 2


Conclusion: All tobacco product evaluated did not induce any signs of severe toxicity or genotoxicity in any of the treatments and do not fulfil the criteria to be classified as genotoxic.

Reported results: (only listed the result of one tobacco product as an example)

  1. Statistical analysis

Adjusted p-values calculated for the micronucleus frequencies for every dose level as compared to the corresponding solvent control after ST in the presence and absence of S9 mix as well as LT in the absence of S9 mix. One way ANOVA with posthoc Dunnett’s test for multiple comparisons for the dose response and a two tailed unpaired student’s t-test for the comparison of positive and negative control were used. The difference between the samples is considered statistically significant at p≤0.05.




Treatment


Test date


Concentration [µg/ml]

Fold increase of MN

over background


Adjusted p- value

Significant increase Y/N


ST+ S9


25.05.2022

1250

0.9

0.9973

N

2500

0.9

0.9517

N

3750

0.6

0.2654

N

5000

0.9

0.9895

N

CPA [5µg/ml]

3.1

0.0003

Y


ST-S9


25.05.2022

1250

1.6

0.6408

N

2500

1.3

0.8995

N

3750

2.9

0.0106

N

5000

1.0

> 0.9999

N

Bleo [0.2µg/ml]

3.8

0.0002

Y


LT-S9


25.05.2022

1250

0.7

0.5958

N

2500

1.3

0.6378

N

3750

0.5

0.1146

N

5000

1.1

0.9929

N

Bleo [0.5µg/ml]

2.9

0.0047

Y

Bleo: Bleomycin; CPA: Cyclophosphamid A; statistically significant increases are highlighted in bold.


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titledi.xpt (a study reference domain for unique device identification)

di.xpt (copied v1.0 of medical devices IG)

  • This example is a copy of Example 1 from di.xpt in SDTMIG-MD v1.0 but with values for SPDEVID and DIVAL revised slightly. 
  • Should I remove the FDA UDI (row 5) unless CTP has or plans to establish UDI values?

Example 1
This shows records for two three devices where the sponsor felt that the type, manufacturer, model number, and serial number were necessary for unique identification. In addition, there was a post-marketing UDI identifier available for the first device.

  • Rows 1-5 show the records for a device given a SPDEVID of ABC001PUFFMASTER3K
  • Rows 5-8 show the records for a device given a SPDEVID of ABC999PUFFMASTER2023
  • Rows 9-12 show


Row

STUDYID

DOMAIN

SPDEVID

DISEQ

DIPARMCD

DIPARM

DIVAL

12011-001

123

DI

PUFFMASTER3K

1

DEVTYPETYPEDEVTYPE

Device Type

MRIAll values in DIVAL corresponding to DEVTYPE in all examples need to be updated to conform with FDA Product Classification codesENDS

22011-001

123

DI

PUFFMASTER3K

2

MANUF

Manufacturer

Acme Machines

32011-001

123

DI

PUFFMASTER3K

3

MODEL

Model Number

45-JFI

42011-001

123

DI

PUFFMASTER3K

4

SERIAL

Serial Number

456789132-AXQ

52011-001

123

DI

PUFFMASTER3K

5

FDAUDI

FDA Unique Device Identifier

456789123xyz

62015-001

123

DI

PUFFMASTER2023

1

DEVTYPETYPEDEVTYPE

Device TypeMRI

SmokeMachine

72015-001

123

DI

PUFFMASTER2023

2

MANUF

Manufacturer

Acme Machines

82015-001

123

DI

PUFFMASTER2023

3

MODEL

Model Number

62-PLC

92015-001

123

DI

PUFFMASTER2023

4

SERIAL

Serial Number

215964564-NFS

10

123

DI

UsualCTCigarette

1

DEVTYPE

Device Type

Combustible Tobacco Cigarette

11

123

DI

UsualCTCigarette

2

MANUF

Manufacturer

Philip Morris International

12

123

DI

UsualCTCigarette

3

MODEL

Model Number

Marlboro Red

13

123

DI

UsualCTCigarette

4

SERIAL

Serial Number

123456789

Expand
titlegt.xpt (similar to LB)

A1:


A2:                                   


RowSTUDYIDASSAYIDDOMAINTXSETCDGTSEQGTTESTCDGTTESTGTCELLEV
(cells evaluated)
GTORRESGTORRESUGTSTRESCGTSTRESNGTSTRESUGTDTC
1123MNvitGTA11RICCRelative Increase in Cell Count00%00%2022-05-25
2123MNvitGTA12RCCRelative Cell Count1540%00%2022-05-25
3123MNvitGTA13RPDRelative Population Doubling1540%00%2022-05-25
4123MNvitGTA14MNCELLSMicronucleated Cells220515Cells1515Cells2022-05-25
5123MNvitGTA15MNCELLSMicronucleated Cells247413Cells1313Cells2022-05-25
6123MNvitGTA16MNCELLSMicronucleated Cells275817Cells1717Cells2022-05-25
7123MNvitGTA17MNCELLSMicronucleated Cells266912Cells1212Cells2022-05-25
8123MNvitGTA18AVGRELAverage Relative MN Frequency
0.57%0.570.57%2022-05-25
9123MNvitGTA21RICCRelative Increase in Cell Count13415.7%15.715.7%2022-05-25
10123MNvitGTA22RCCRelative Cell Count13413.0%13.013.0%2022-05-25
11123MNvitGTA23RPDRelative Population Doubling1347.9%7.97.9%2022-05-25
12123MNvitGTA24MNCELLSMicronucleated Cells326620Cells2020Cells2022-05-25
13123MNvitGTA25MNCELLSMicronucleated Cells219017Cells1717Cells2022-05-25
14123MNvitGTA26MNCELLSMicronucleated Cells275813Cells1313Cells2022-05-25
15123MNvitGTA27MNCELLSMicronucleated Cells271421Cells2121Cells2022-05-25
16123MNvitGTA28AVGRELAverage Relative MN Frequency
0.66%0.660.66%2022-05-25
...