Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Expand
titletx.xpt (trial sets)
  • During CT definition/reviews will decide appropriate TXPARM and TXVAL; Treatment duration may be controlled;  For now, we just include good example values based on our experience
  • Assumption: The Trial Sets (TX) domain provides the list of distinct sets of subjects having different experimental factors, treatment factors, inherent characteristics, or distinct sponsor designations as specified in the trial design.
  • Add GTMETHOD for "plate counted manually"... ok? If yes, need to add this to other examples.
  • How do we handle "toxictoxic, no revertant colonies"?  (LAK will add 6 records with GTSTAT = NOT DONE, GTREASND = "TOO MUCH CYTOTOXICITY,"
  • Condition of background bacterial bacterial lawn?  Slight thinning, Very thin? - refer to SEND team's marked-up table.
    • new Test code of Cytotoxicity with GTORRES = S, V (controlled terms)
    • Each plate we would have one result record for Revertent count and another for the lawn evaluation (NORMAL, SLIGHT THINNING, VERY THIN)
  • When "-" in Mean, Std Dev, Fold Inc - refer to SEND team's marked-up table (GTSTAT = NOT DONE; variety of REASND)
  • What do we do for defined regimes (e.g. ISO Regime, Canadian ..) or all attributes should be listed as expected variables to allow for all including custom regimes (Puff volume, etc.)

               

Below the SETS shown in the TX table are rows A, F, I, and R (probably don't need R)         

null?
RowSTUDYIDASSAYIDDOMAINSETCD
SET (what sponsor calls it)
TXSEQTXPARMCDTXPARMTXVAL
18325064AmesTX

SetA (Row 1)



METACTMetabolic Activation  (should there be two parms? Presence, type)?None
28325064AmesTXSetA

TRTDRTRGTreatment Duration target. (how do we show 3-6 hour range?  start/end, target and tolerance?, one text field not-analyzable)
38325064AmesTXSetA

TRTDRTOLTreatment Duration Tolerance
48325064AmesTXSetA

TRTDURUTreatment Duration Unit (this is for both TRTDURT, TRTDURTOL)
58325064AmesTXSetA

INTRVN

name of the intervention article

(Tobacco ProdA, Bleomycin or Cyclophosphamid A)

DMSO. (or TA1)
68325064AmesTXSetA

ITVTYPE

type of intervention article

choices of values:  product; negative control; positive control

Vehicle Control. (or Product)
78325064AmesTXSetA

ITVCONCConcentration of intervention article0 (because no TA is used, this is just DMSO)
88325064AmesTXSetA

ITVCONCUConcentration Unitug/plate
98325064AmesTXSetA

STRAINStrain/SubstrainTA98
108325064AmesTXSetA

REGIMESmoking RegimeISO Regime
...









8325064AmesTX

SetF

(row 46)



METACTMetabolic Activation  (should there be two parms? Presence, type)?None

8325064AmesTX

SetF



TRTDRTRGTreatment Duration target. (how do we show 3-6 hour range?  start/end, target and tolerance?, one text field not-analyzable)

8325064AmesTXSetF

TRTDRTOLTreatment Duration Tolerance

8325064AmesTXSetF

TRTDURUTreatment Duration Unit (this is for both TRTDURT, TRTDURTOL)

8325064AmesTXSetF

INTRVN

name of the intervention article

(Tobacco ProdA, Bleomycin or Cyclophosphamid A)

2-NitrofluorineTA1

8325064AmesTXSetF

ITVTYPE

type of intervention article

choices of values:  product; negative control; positive control

Positive ControlProduct

8325064AmesTXSetF

ITVCONCConcentration of intervention article500

8325064AmesTXSetF

ITVCONCUConcentration Unitug/plate

8325064AmesTXSetF

STRAINStrain/SubstrainTA98

8325064AmesTXSetF

REGIMESmoking RegimeISO Regime
...









8325064AmesTX

SetI(row 69)



METACTMetabolic Activation  (should there be two parms? Presence, type)?None

8325064AmesTXSetI

TRTDRTRGTreatment Duration target. (how do we show 3-6 hour range?  start/end, target and tolerance?, one text field not-analyzable)

8325064AmesTXSetI

TRTDRTOLTreatment Duration Tolerance

8325064AmesTXSetI

TRTDURUTreatment Duration Unit (this is for both TRTDURT, TRTDURTOL)

8325064AmesTXSetI

INTRVN

name of the intervention article

(Tobacco ProdA, Bleomycin or Cyclophosphamid A)

2-Nitrofluorine

8325064AmesTXSetI

ITVTYPE

type of intervention article

choices of values:  product; negative control; positive control

Positive Control

8325064AmesTXSetI

ITVCONCConcentration of intervention article5

8325064AmesTXSetI

ITVCONCUConcentration Unitug/plate

8325064AmesTXSetI

STRAINStrain/SubstrainTA98

8325064AmesTXSetI

REGIMESmoking RegimeISO
...









8325064AmesTX

SetR

(Row 18)



METACTMetabolic Activation  (should there be two parms? Presence, type)?None

8325064AmesTX

SetR



TRTDRTRGTreatment Duration target. (how do we show 3-6 hour range?  start/end, target and tolerance?, one text field not-analyzable)

8325064AmesTXSetR

TRTDRTOLTreatment Duration Tolerance

8325064AmesTXSetR

TRTDURUTreatment Duration Unit (this is for both TRTDURT, TRTDURTOL)

8325064AmesTXSetR

INTRVN

name of the intervention article

(Tobacco ProdA, Bleomycin or Cyclophosphamid A)

4-Nitroquinoline-1-oxide

8325064AmesTXSetR

ITVTYPE

type of intervention article

choices of values:  product; negative control; positive control

Positive Control

8325064AmesTXSetR

ITVCONCConcentration of intervention article2

8325064AmesTXSetR

ITVCONCUConcentration Unitug/plate

8325064AmesTXSetR

STRAINStrain/SubstrainTA98

8325064AmesTXSetR

REGIMESmoking RegimeISO
...








Expand
titlegt.xpt (similar to LB)

Do we need GTMETHOD?

151617242526
RowSTUDYIDASSAYIDDOMAINTXSETCDPLTWLIDGTSEQGTTESTCDGTTESTGTORRESGTORRESUGTSTRESCGTSTRESNGTSTRESUGTDTCGTMETHOD
18325064AmesGTSETA 0_11RPPRevertant Numbers Per Plate26
2626

2015-08-03

INSTRUMENT COUNTED

28325064AmesGTSETA 0_22RPPRevertant Numbers Per Plate35
3535

2015-08-03
INSTRUMENT COUNTED
38325064AmesGTSETA 0_33RPPRevertant Numbers Per Plate39
3939

2015-08-03
INSTRUMENT COUNTED
48325064AmesGTSETA 0_44RPPRevertant Numbers Per Plate35
3535

2015-08-03

INSTRUMENT COUNTED

58325064AmesGTSETA 0_55RPPRevertant Numbers Per Plate30
3030
2015-08-03INSTRUMENT COUNTED
68325064AmesGTSETA ALL6RPPMEANMean of Revertant Numbers Per Plate33.0
33.033.0

INSTRUMENT COUNTED
78325064AmesGTSETA ALL7RPPSTDDVStandard Deviation of Revertant Numbers Per Plate5.0
5.05.088325064AmesGTSETA ALL8RPPFLDINC

Fold Increase of Revertant Numbers Per Plate

INSTRUMENT COUNTED

...















8325064AmesGTSETF5_11RPPRevertant Numbers Per Plate8
88

MANUALLY COUNTED

8325064AmesGTSETF 5_22RPPRevertant Numbers Per Plate10
1010

MANUALLY COUNTED

8325064AmesGTSETF 5_33RPPRevertant Numbers Per Plate12
1212

MANUALLY COUNTED

8325064AmesGTSETFALL6RPPMEANMean of Revertant Numbers Per Plate

10.0



10.0


10.0






8325064AmesGTSETF ALL7RPPSTDDVStandard Deviation of Revertant Numbers Per Plate2.0
2.02.0



8325064AmesGTSETF ALL8RPPFLDINCFold Increase of Revertant Numbers Per Plate0.3
0.30.3


...















8325064AmesGTSETI5_11RPPRevertant Numbers Per Plate1104
11041104



8325064AmesGTSETI5_22RPPRevertant Numbers Per Plate1037
10371037



8325064AmesGTSETI5_33RPPRevertant Numbers Per Plate971
971971



8325064AmesGTSETIALL6RPPMEANMean of Revertant Numbers Per Plate

1037.3



1037.3


1037.3






8325064AmesGTSETIALL7RPPSTDDVStandard Deviation of Revertant Numbers Per Plate66.5
66.566.5



8325064AmesGTSETIALL8RPPFLDINCFold Increase of Revertant Numbers Per Plate31.4
31.431.4


...