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This is an example showing trial design and results data of Study #8325064 for the determination of the in vitro bacterial reverse mutation test  potential of 10 tobacco products in the in vitro Micronucleus Assay

The bacterial reverse mutation test uses amino acid-requiring strains of Salmonella typhimurium (S. typhimurium) and Escherichia coli (E. coli) to detect point mutations, which involve substitution, addition or deletion of one or a few DNA base pairs. The principle of this bacterial reverse mutation test is that it detects chemicals that induce mutations which revert mutations present in the tester strains and restore the functional capability of the bacteria to synthesize an essential amino acid. The revertant bacteria are detected by their ability to grow in the absence of the amino acid required by the parent tester strain.


Image Modified


Info
  • red font - indicates potential for CT code lists
  • green font - links to other domains
  • purple font - to be discussed

...

Expand
titlets.xpt (trial summary, study level parameters)
  • Assumption: The intent of this dataset is to provide a summary of trial (study) information. This is not subject-level data. 
  • What is the best ASSAYID, Species, Test System, GLP?


123123123123

Row

STUDYID

ASSAYID

DOMAIN

TSSEQ

TSGRPID

TSPARMCD

TSPARM

TSVAL

TSVALNF

11238325064AmesTS1
GLPTYPGood Laboratory Practice TypeFDA
21238325064AmesTS2
GLPTYPGood Laboratory Practice TypeOECD
31238325064AmesTS1
STSTDTCStudy Start Date2015-07-29
4123

TS1
STITLEStudy Title

Determination of the in vitro genotoxicity potential of 10 tobacco products in the in vitro Micronucleus Assay


5123

TS1
SNDIGVERSEND Implementation Guide VersionTOBACCO IMPLEMENTATION GUIDE VERSION 1.0
6123

TS1
SNDCTVERSEND Controlled Terminology VersionSEND Terminology 2021-09-30
7123

TS1
SSPONSORSponsor OrganizationExample Sponsor Inc.
8

TS1
SPREFIDSponsor's Study Reference ID
NOT APPLICABLE
9

TS11TSTFNAMTest Facility NameExample Tox Lab Name
10123

TS11TSTFLOCTest Facility Location10 Somewhere Street, Montgomery, AL 10000
11123

TS11TFCNTRYTest Facility CountryUSA
12123

TS11STDIRStudy DirectorDr. R. Smith
13

TS1
GLPFLGLP FlagN
14

TS1
ASTDAssay StandardOECD Test No. 471 
15123
TS1
ASTDVAssay Standard Version2020-06-29
16123
TS1
SSTYPStudy TypeGENOTOXICITY IN VITRO
17123
TS1
SSSTYPStudy Sub TypeBacterial Reverse Mutation Test
18123
TS1
SPECIESSpeciesHomo Sapiens
19123
TS1
??Test System?TK6 Lymphoblastoid Suspension Cells
MNvit
Expand
titletx.xpt (trial sets)
  • During CT definition/reviews will decide appropriate TXPARM and TXVAL; Treatment duration may be controlled;  For now, we just include good example values based on our experience
  • Assumption: The Trial Sets (TX) domain provides the list of distinct sets of subjects having different experimental factors, treatment factors, inherent characteristics, or distinct sponsor designations as specified in the trial design.
  • Where is TK6 cell type?  is this test system (see below)
    • needs to be allowed to vary down to the well level / result level
A1: Image Removed

A2:                                   Image Removed

RowSTUDYIDASSAYIDDOMAINSETCD
SET (what sponsor calls it)
TXSEQTXPARMCDTXPARMTXVAL
123

8325064
MNvit
AmesTX

A1

(table 1, row 1, ST exposure with S9

P1 (plate 1)



METACTMetabolic Activation  (should there be two parms? Presence, type)?
+S9
None
123

8325064
MNvit
AmesTX
A1
P1

TRTDRTRGTreatment Duration target. (how do we show 3-6 hour range?  start/end, target and tolerance?, one text field not-analyzable)
3123




TX
A1
P1

TRTDRTOLTreatment Duration Tolerance
123MNvit




TX
A1
P1

TRTDURUTreatment Duration Unit (this is for both TRTDURT, TRTDURTOL)
H123MNvit




TX
A1123MNvit
P1

INTRVN

name of the intervention article

(Tobacco ProdA, Bleomycin or Cyclophosphamid A)

Tobacco ProdA
DMSO TA1



TX
A1
P1

ITVTYPE

type of intervention article

choices of values:  product; negative control; positive control

Product123MNvit
Vehicle Control



TX
A1
P1

ITVCONCConcentration of intervention article0
123
MNvit



TX
A1
P1

ITVCONCUConcentration Unitug/ml
123MNvitTX

A2




TXP1

STRAINStrain/SubstrainTA98



TXP1

REGIMESmoking Regime



TXP1

RUN

Assay run number

1




TXP1

PORTPort ID



TXP1

SMPLIDSample ID



TXP1

SMKFRCSmoke Fraction



TXP1

REPNUMReplicate Number











































TXP2
(table 1, row 2)


METACTMetabolic Activation  (should there be two parms? Presence, type)?+S9
123
MNvit



TX
A2
P2

TRTDRTRGTreatment Duration target. (how do we show 3-6 hour range?  start/end, target and tolerance?, one text field not-analyzable)3
123MNvit



TX
A2
P2

TRTDRTOLTreatment Duration Tolerance
123MNvit




TX
A2
P2

TRTDURUTreatment Duration Unit (this is for both TRTDURT, TRTDURTOL)H
123MNvit



TX
A2123MNvit
P2

INTRVNname of the intervention article
Tobacco ProdA
DMSO TA1



TX
A2
P2

ITVTYPEtype of intervention articleProduct
123
MNvit



TX
A2
P2

ITVCONCConcentration of i a 1250
123
MNvit



TX
A2
P2

ITVCONCUConcentration Unitug/ml
...



TXP2

STRAINStrain/SubstrainWP2 uvrA pKM10 1



TXP2

REGIMESmoking Regime



TXP2

RUN

Assay run number

1




TXP2

PORTPort ID



TXP2

SMPLIDSample ID



TXP2

SMKFRCSmoke Fraction



TXP2

REPNUMReplicate Number
Expand
titlegt.xpt (similar to LB)

A1: Image Removed

A2:                                   Image RemovedDo we need GTMETHOD?

RowSTUDYIDASSAYIDDOMAINTXSETCDGTSEQGTTESTCDGTTESTGTCELLEV
(cells evaluated)
GTORRESGTORRESUGTSTRESCGTSTRESNGTSTRESUGTDTC
1
123
MNvit


GT
A1

P1

1
RICCRelative Increase in Cell Count15400000%00%2022-05-252123MNvitGTA12RCCRelative Cell Count1540%00%2022-05-253123MNvitGTA13RPDRelative Population Doubling1540%00%2022-05-254123MNvitGTA14MNCELLSMicronucleated Cells220515Cells1515Cells2022-05-255123MNvitGTA15MNCELLSMicronucleated Cells247413Cells1313Cells2022-05-256123MNvitGTA16MNCELLSMicronucleated Cells275817Cells1717Cells2022-05-257123MNvitGTA17MNCELLSMicronucleated Cells266912Cells1212Cells2022-05-258123MNvitGTA18AVGRELAverage Relative MN Frequency0.57%0.570.57%2022-05-259123MNvit
RPPRevertant Numbers Per Plate
26




2015-08-03
2

GTP12RPPRevertant Numbers Per Plate
35




2015-08-03
3

GTP13RPPRevertant Numbers Per Plate
39




2015-08-03
4

GT
4RPPRevertant Numbers Per Plate
35Cells

Cells
2015-08-03
5

GT
5RPPRevertant Numbers Per Plate
30Cells

Cells2015-08-03
6













7













8













9

GTA21RICCRelative Increase in Cell Count
134

15.7%15.715.7%2022-05-25
10
123
MNvit


GTA22RCCRelative Cell Count
134

13.0%13.013.0%2022-05-25
11
123MNvit


GTA23RPDRelative Population Doubling
134

7.9%7.97.9%2022-05-25
12
123MNvit


GTA24MNCELLSMicronucleated Cells
3266

20Cells2020Cells2022-05-25
13
123MNvit


GTA25MNCELLSMicronucleated Cells
2190

17Cells1717Cells2022-05-25
14
123
MNvit


GTA26MNCELLSMicronucleated Cells
2758

13Cells1313Cells2022-05-25
15
123
MNvit


GTA27MNCELLSMicronucleated Cells
2714

21Cells2121Cells2022-05-25
16
123MNvit


GTA28AVGRELAverage Relative MN Frequency
0.66%0.660.66%2022-05-25
...