IS Example 11 in the SDTMIG 3.4 needs to be updated to cix SuppIS dataset.
Related JIRA issues: SDS-2553; SDS-2563
Discussion with Richard Marshall: https://wiki.cdisc.org/x/-otLCQ
Suggested changes:
- change IDVAR to ISSEQ in both suppIS datasets.
- change QNAM and QLBEL if need be, discuss with team, but suppIS row 1 should be QNAM = "MULTIPLE" followed by QNAM = XXXXXX1-4.to ABTR and Antibody Target
- change QVAL to Dog Dander Antigen, Cat Dander Antigen, Horse Dander Antigen, Cow Dander Antigen.
Dataset wrap |
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Rowcaps |
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Row 1: | Shows the detection of immunoglobulin E (IgE) antibody against multiple animal allergens. |
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ISBDAGNT is used to house the generic but controlled value "ANIMAL MIX ANTIGENS". | Rows 2-3: | Show the amount of IgE antibody against dog dander and its RAST classification score. |
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Rows 4-5: | Show the amount of IgE antibody against cat dander and its RAST classification score. |
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Rows 6-7: | Show the amount of IgE antibody against horse dander and its RAST classification score. |
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Rows 8-9: | Show the amount of IgE antibody against cow dander and its RAST classification score. |
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Row 10: | Shows immunoglobulin E (IgE) antibody against multiple tree pollen allergens is not detected. |
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Dataset2 |
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Row | STUDYID | DOMAIN | USUBJID | ISSEQ | ISGRPID | ISREFID | ISTESTCD | ISTEST | ISBDAGNT | ISTSTDTL | ISORRES | ISORRESU | ISSTRESC | ISSTRESN | ISSTRESU | ISSPEC | ISMETHOD | VISITNUM | VISIT | ISDTC |
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1 | XYZ | IS | XYZ1234 | 1 | 1 | 12453333 | ARIGEAB | Allergen-induced IgE Antibody | ANIMAL MIX ANTIGENS |
| POSITIVE |
| POSITIVE |
|
| SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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2 | XYZ | IS | XYZ1234 | 2 | 2 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | DOG DANDER ANTIGEN |
| 0.12 | U/mL | 0.12 | 0.12 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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3 | XYZ | IS | XYZ1234 | 3 | 2 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | DOG DANDER ANTIGEN | RAST SCORE | 0 |
| 0 | 0 |
| SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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4 | XYZ | IS | XYZ1234 | 4 | 3 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | CAT DANDER ANTIGEN |
| 0.19 | U/mL | 0.19 | 0.19 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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5 | XYZ | IS | XYZ1234 | 5 | 3 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | CAT DANDER ANTIGEN | RAST SCORE | 0 |
| 0 | 0 |
| SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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6 | XYZ | IS | XYZ1234 | 6 | 4 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | COW DANDER ANTIGEN |
| 44 | U/mL | 44 | 44 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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7 | XYZ | IS | XYZ1234 | 7 | 4 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | COW DANDER ANTIGEN | RAST SCORE | 4 |
| 4 | 4 |
| SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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8 | XYZ | IS | XYZ1234 | 8 | 5 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | HORSE DANDER ANTIGEN |
| 120 | U/mL | 120 | 120 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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9 | XYZ | IS | XYZ1234 | 9 | 5 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | HORSE DANDER ANTIGEN | RAST SCORE | 6 |
| 6 | 6 |
| SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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10 | XYZ | IS | XYZ1234 | 10 |
| 12458888 | ARIGEAB | Allergen-induced IgE Antibody | TREE MIX POLLENS |
| NEGATIVE |
| NEGATIVE |
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| SERUM | RIA | 1 | SCREENING | 2018-06-20 |
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Dataset wrap |
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Dataset2 |
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Row | STUDYID | DOMAIN | USUBJID | IDVAR | IDVARVAL | QNAM | QLABEL | QVAL | QORIG | QEVAL |
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1 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISABTR | Antibody Target | MULTIPLE | CRF |
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2 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISABTR1 | Antibody Target 1 | DOG DANDER ANTIGEN | CRF |
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3 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISABTR2 | Antibody Target 2 | CAT DANDER ANTIGEN | CRF |
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4 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISABTR3 | Antibody Target 3 | HORSE DANDER ANTIGEN | CRF |
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5 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISABTR4 | Antibody Target 4 | COW DANDER ANTIGEN | CRF |
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6 | XYZ | IS | XYZ1234 | ISSEQ | 10 | ISABTR | Antibody Target | MULTIPLE | CRF |
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7 | XYZ | IS | XYZ1234 | ISSEQ | 10 | ISABTR1 | Antibody Target 1 | Olive Tree pollenBOX ELDER POLLEN | CRF |
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8 | XYZ | IS | XYZ1234 | ISSEQ | 10 | ISABTR2 | Antibody Target 2 | Mango Tree pollenOLIVE TREE POLLEN | CRF |
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9 | XYZ | IS | XYZ1234 | ISSEQ | 10 | ISABTR3 | Antibody Target 3 | Silver Birch Tree PollenSILVER BIRCH POLLEN | CRF |
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Dataset wrap |
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Dataset2 |
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Row | STUDYID | DOMAIN | USUBJID | IDVAR | IDVARVAL | QNAM | QLABEL | QVAL | QORIG | QEVAL |
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1 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISALGREG | Allergen Mixture Region | CENTRAL CA, AREA 14 | CRF |
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2 | XYZ | IS | XYZ1234 | ISSEQ | 10 | ISALGREG | Allergen Mixture Region |
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CENTRAL FL, AREA 50 | CRF | |
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Richard's comments were that if you were to use the "MULTIPLE" convention in IS row 1 as appeared in the original example, ISBDAGNT= ANIMAL MIX ANTIGENS, MULTIPLE, then the suppIS dataset was created incorrectly. "MULTIPLE" requires QNAM to be xxx1-4. So if we want to keep the "MULTIPLE" in binding agent IS row 1, QNAM must be ISBDAG1-4.
However since the panel allergy results can also be reported by the region (as regional mixes), this ISBDAGNT= ANIMAL MIX ANTIGENS, MULTIPLE, doesn't make sense because this also implies multiple regions are associated with a single record, when in fact the IS row 1 record only indicates one region. So it is best to take the word "MULTIPLE" out of ISBDAGNT IS row 1.
Lastly, it seems odd to have dog, cat, horse, cow in QVAL because the panel antibody test targets dog dander, cat dander, horse dander, cow dander. QVAL values are imprecise and should be updated.
Dataset wrap |
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|
Rowcaps |
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Row 1: | Shows the detection of immunoglobulin E (IgE) antibody against multiple animal allergens. ISBDAGNT is used to house the generic but controlled value "ANIMAL MIX ANTIGENS". |
---|
Rows 2-3: | Show the amount of IgE antibody against dog dander and its RAST classification score. |
---|
Rows 4-5: | Show the amount of IgE antibody against cat dander and its RAST classification score. |
---|
Rows 6-7: | Show the amount of IgE antibody against horse dander and its RAST classification score. |
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Rows 8-9: | Show the amount of IgE antibody against cow dander and its RAST classification score. |
---|
Dataset2 |
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Row | STUDYID | DOMAIN | USUBJID | ISSEQ | ISGRPID | ISREFID | ISTESTCD | ISTEST | ISBDAGNT | ISTSTDTL | ISORRES | ISORRESU | ISSTRESC | ISSTRESN | ISSTRESU | ISSPEC | ISMETHOD | VISITNUM | VISIT | ISDTC |
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1 | XYZ | IS | XYZ1234 | 1 | 1 | 12453333 | ARIGEAB | Allergen-induced IgE Antibody | ANIMAL MIX ANTIGENS, MULTIPLE | POSITIVE | POSITIVE | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 2 | XYZ | IS | XYZ1234 | 2 | 2 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | DOG DANDER ANTIGEN | 0.12 | U/mL | 0.12 | 0.12 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 3 | XYZ | IS | XYZ1234 | 3 | 2 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | DOG DANDER ANTIGEN | RAST SCORE | 0 | 0 | 0 | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 4 | XYZ | IS | XYZ1234 | 4 | 3 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | CAT DANDER ANTIGEN | 0.19 | U/mL | 0.19 | 0.19 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 5 | XYZ | IS | XYZ1234 | 5 | 3 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | CAT DANDER ANTIGEN | RAST SCORE | 0 | 0 | 0 | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 6 | XYZ | IS | XYZ1234 | 6 | 4 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | COW DANDER ANTIGEN | 44 | U/mL | 44 | 44 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 7 | XYZ | IS | XYZ1234 | 7 | 4 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | COW DANDER ANTIGEN | RAST SCORE | 4 | 4 | 4 | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 8 | XYZ | IS | XYZ1234 | 8 | 5 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | HORSE DANDER ANTIGEN | 120 | U/mL | 120 | 120 | U/mL | SERUM | RIA | 1 | SCREENING | 2018-06-20 | 9 | XYZ | IS | XYZ1234 | 9 | 5 | 12456666 | ARIGEAB | Allergen-induced IgE Antibody | HORSE DANDER ANTIGEN | RAST SCORE | 6 | 6 | 6 | SERUM | RIA | 1 | SCREENING | 2018-06-20 | Dataset wrap |
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Dataset2 |
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Row | STUDYID | DOMAIN | USUBJID | IDVAR | IDVARVAL | QNAM | QLABEL | QVAL | QORIG | QEVAL |
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1 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISBDAG1 | Binding Agent 1 | DOG | CRF | 2 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISBDAG2 | Binding Agent 2 | CAT | CRF | 3 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISBDAG3 | Binding Agent 3 | HORSE | CRF | 4 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISBDAG4 | Binding Agent 4 | COW | CRF | Dataset wrap |
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Dataset2 |
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Row | STUDYID | DOMAIN | USUBJID | IDVAR | IDVARVAL | QNAM | QLABEL | QVAL | QORIG | QEVAL |
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1 | XYZ | IS | XYZ1234 | ISSEQ | 1 | ISALGREG | Allergen Mixture Region | CENTRAL CA, AREA 14 |
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